Bra028145 (AtALY4, DIP2, ALY4)


Aliases : AtALY4, DIP2, ALY4

Description : mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP trafficking complex


Gene families : OG0013501 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra028145
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_273


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004527 exonuclease activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004843 cysteine-type deubiquitinase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005515 protein binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005685 U1 snRNP IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006376 mRNA splice site recognition IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008094 ATP-dependent activity, acting on DNA IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008234 cysteine-type peptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008270 zinc ion binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0010181 FMN binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016579 protein deubiquitination IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019783 ubiquitin-like protein peptidase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0022618 protein-RNA complex assembly IEP Brassica rapa GO terms from Neighborhoods
CC GO:0030127 COPII vesicle coat IEP Brassica rapa GO terms from Neighborhoods
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043687 post-translational protein modification IEP Brassica rapa GO terms from Neighborhoods
BP GO:0070646 protein modification by small protein removal IEP Brassica rapa GO terms from Neighborhoods
BP GO:0070647 protein modification by small protein conjugation or removal IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071826 protein-RNA complex organization IEP Brassica rapa GO terms from Neighborhoods
CC GO:0097525 spliceosomal snRNP complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0101005 deubiquitinase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0120114 Sm-like protein family complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140097 catalytic activity, acting on DNA IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000504 RRM_dom 76 142
IPR025715 FoP_C 206 254
No external refs found!