Bra027021 (ATSCO1/CPEF-G, ATSCO1, SCO1)

Aliases : ATSCO1/CPEF-G, ATSCO1, SCO1

Description : translation elongation factor *(EF-G)

Gene families : OG0008381 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra027021
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_41

Target	Alias	Description	ECC score	Gene Family Method	Actions
Mp7g06620.1	ATSCO1/CPEF-G,...	translation elongation factor *(EF-G)	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.00040	ATSCO1/CPEF-G,...	translation elongation factor *(EF-G)	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004751	ribose-5-phosphate isomerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004827	proline-tRNA ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005261	monoatomic cation channel activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006352	DNA-templated transcription initiation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006433	prolyl-tRNA aminoacylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006520	amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006605	protein targeting	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006612	protein targeting to membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006886	intracellular protein transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008104	protein localization	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008152	metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008312	7S RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008883	glutamyl-tRNA reductase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008942	nitrite reductase [NAD(P)H] activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009052	pentose-phosphate shunt, non-oxidative branch	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0009512	cytochrome b6f complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0009521	photosystem	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0009523	photosystem II	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009987	cellular process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010206	photosystem II repair	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010207	photosystem II assembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015031	protein transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015252	proton channel activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015979	photosynthesis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016491	oxidoreductase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019751	polyol metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019752	carboxylic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0019898	extrinsic component of membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0022607	cellular component assembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0030091	protein repair	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033036	macromolecule localization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033365	protein localization to organelle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034311	diol metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034312	diol biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043038	amino acid activation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043039	tRNA aminoacylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043436	oxoacid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044237	cellular metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044249	cellular biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0045047	protein targeting to ER	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0045184	establishment of protein localization	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046165	alcohol biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046173	polyol biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046857	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0048500	signal recognition particle	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0050661	NADP binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051287	NAD binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051536	iron-sulfur cluster binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051540	metal cluster binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051641	cellular localization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051668	localization within membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0065003	protein-containing complex assembly	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0070069	cytochrome complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0070727	cellular macromolecule localization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071702	organic substance transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071705	nitrogen compound transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072594	establishment of protein localization to organelle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072657	protein localization to membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090150	establishment of protein localization to membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0098796	membrane protein complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0098809	nitrite reductase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1990204	oxidoreductase complex	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR004161	EFTu-like_2	402	468
IPR000795	T_Tr_GTP-bd_dom	87	359
IPR041095	EFG_II	482	555
IPR005517	Transl_elong_EFG/EF2_IV	557	675
IPR000640	EFG_V-like	679	765

External Links

No external refs found!

Bra027021 (ATSCO1/CPEF-G, ATSCO1, SCO1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation