Bra026825 (AL7, AtAL7)

Aliases : AL7, AtAL7

Description : methylation reader Alfin of PRC1 complex

Gene families : OG0007696 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra026825
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_70

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0042393	histone binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003712	transcription coregulator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003714	transcription corepressor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003725	double-stranded RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004864	protein phosphatase inhibitor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005047	signal recognition particle binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005685	U1 snRNP	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005785	signal recognition particle receptor complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006376	mRNA splice site recognition	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006605	protein targeting	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006612	protein targeting to membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006807	nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009966	regulation of signal transduction	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010646	regulation of cell communication	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010921	regulation of phosphatase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019208	phosphatase regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019212	phosphatase inhibitor activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019888	protein phosphatase regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0022618	protein-RNA complex assembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0023051	regulation of signaling	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030880	RNA polymerase complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031399	regulation of protein modification process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0031966	mitochondrial membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032774	RNA biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033365	protein localization to organelle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0035303	regulation of dephosphorylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044030	regulation of DNA methylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044249	cellular biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0045047	protein targeting to ER	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048583	regulation of response to stimulus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0050790	regulation of catalytic activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051052	regulation of DNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051246	regulation of protein metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051336	regulation of hydrolase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051668	localization within membrane	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0065009	regulation of molecular function	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071826	protein-RNA complex organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072594	establishment of protein localization to organelle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072657	protein localization to membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090150	establishment of protein localization to membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0097525	spliceosomal snRNP complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0120114	Sm-like protein family complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0140535	intracellular protein-containing complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR021998	Alfin_N	12	139
IPR019787	Znf_PHD-finger	191	236

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Bra026825 (AL7, AtAL7)

Expression Profile

Co-expression Networks

Functional Annotation