Bra025017

Description : component *(eL32) of large ribosomal-subunit (LSU) proteome

Gene families : OG0003069 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003069_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra025017
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_28

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004222	metalloendopeptidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004852	uroporphyrinogen-III synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005488	binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008270	zinc ion binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0016459	myosin complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016836	hydro-lyase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016887	ATP hydrolysis activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043038	amino acid activation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043039	tRNA aminoacylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR011713	Leu-rich_rpt_3	989	1007
IPR001515	Ribosomal_eL32	669	761
IPR027275	PRC-brl_dom	181	266
IPR002676	RimM_N	85	174

External Links

No external refs found!

Bra025017

Expression Profile

Co-expression Networks

Functional Annotation