Bra023824 (uL18-L1)

Aliases : uL18-L1

Description : splicing factor *(U18-L1)

Gene families : OG0026338 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra023824
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_99

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008233	peptidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008234	cysteine-type peptidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008270	zinc ion binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016579	protein deubiquitination	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043169	cation binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043687	post-translational protein modification	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046872	metal ion binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046914	transition metal ion binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0070646	protein modification by small protein removal	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0101005	deubiquitinase activity	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR005484	Ribosomal_uL18	199	290

External Links

No external refs found!

Bra023824 (uL18-L1)

Expression Profile

Co-expression Networks

Functional Annotation