Bra023612 (GAD, AtGAD1, GAD1)

Aliases : GAD, AtGAD1, GAD1

Description : glutamate decarboxylase *(GAD)

Gene families : OG0002046 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002046_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra023612
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_57

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	IEA	Interproscan
BP	GO:0019752	carboxylic acid metabolic process	IEA	Interproscan
MF	GO:0019842	vitamin binding	None	Extended
MF	GO:0030170	pyridoxal phosphate binding	IEA	Interproscan
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
MF	GO:0070279	vitamin B6 binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0000786	nucleosome	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004650	polygalacturonase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008061	chitin binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008170	N-methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008649	rRNA methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0009055	electron transfer activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0009916	alternative oxidase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016436	rRNA (uridine) methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016597	amino acid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031167	rRNA methylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031406	carboxylic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043177	organic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0070042	rRNA (uridine-N3-)-methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0070475	rRNA base methylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002129	PyrdxlP-dep_de-COase	2	351

External Links

No external refs found!

Bra023612 (GAD, AtGAD1, GAD1)

Expression Profile

Co-expression Networks

Functional Annotation