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  5. Bra022976

Bra022976 (DEG11, LHCB1.4, LHB1B1)


Aliases : DEG11, LHCB1.4, LHB1B1

Description : component *(LHCb1/2/3) of LHC-II complex


Gene families : OG0000370 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra022976
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_237

Target Alias Description ECC score Gene Family Method Actions
Bra005425 DEG11, LHCB1.4, LHB1B1 component *(LHCb1/2/3) of LHC-II complex 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra010807 LHCB1.3, AB140,... component *(LHCb1/2/3) of LHC-II complex 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_4_28800.1 CAB3, LHCB1.2, AB180 component *(LHCb1/2/3) of LHC-II complex 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_4_28820.1 CAB3, LHCB1.2, AB180 component *(LHCb1/2/3) of LHC-II complex 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_4_28860.1 CAB3, LHCB1.2, AB180 component *(LHCb1/2/3) of LHC-II complex 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_4_28880.1 CAB3, LHCB1.2, AB180 component *(LHCb1/2/3) of LHC-II complex 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004620 phospholipase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004629 phospholipase C activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005575 cellular_component IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008150 biological_process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008152 metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008299 isoprenoid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009116 nucleoside metabolic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0009521 photosystem IEP Brassica rapa GO terms from Neighborhoods
CC GO:0009522 photosystem I IEP Brassica rapa GO terms from Neighborhoods
CC GO:0009523 photosystem II IEP Brassica rapa GO terms from Neighborhoods
CC GO:0009538 photosystem I reaction center IEP Brassica rapa GO terms from Neighborhoods
CC GO:0009654 photosystem II oxygen evolving complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009719 response to endogenous stimulus IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009725 response to hormone IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009733 response to auxin IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010033 response to organic substance IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010109 regulation of photosynthesis IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010207 photosystem II assembly IEP Brassica rapa GO terms from Neighborhoods
MF GO:0010242 oxygen evolving activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015979 photosynthesis IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015986 proton motive force-driven ATP synthesis IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016298 lipase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0019898 extrinsic component of membrane IEP Brassica rapa GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Brassica rapa GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042221 response to chemical IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042548 regulation of photosynthesis, light reaction IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042549 photosystem II stabilization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Brassica rapa GO terms from Neighborhoods
BP GO:0050896 response to stimulus IEP Brassica rapa GO terms from Neighborhoods
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Brassica rapa GO terms from Neighborhoods
CC GO:0098796 membrane protein complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901135 carbohydrate derivative metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901657 glycosyl compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:1902494 catalytic complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:1990204 oxidoreductase complex IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 65 232
No external refs found!