Bra022860 (EMA1, SAD2, URM9, GIR1)

Aliases : EMA1, SAD2, URM9, GIR1

Description : assembly factor (SAD2/EMA) of RNA-induced silencing complex (RISC) assembly

Gene families : OG0006174 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra022860
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_211

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
MF	GO:0031267	small GTPase binding	IEA	Interproscan
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0051020	GTPase binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003909	DNA ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004198	calcium-dependent cysteine-type endopeptidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004518	nuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004525	ribonuclease III activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004540	RNA nuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006310	DNA recombination	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006606	protein import into nucleus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006913	nucleocytoplasmic transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033365	protein localization to organelle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034504	protein localization to nucleus	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0042393	histone binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043190	ATP-binding cassette (ABC) transporter complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051169	nuclear transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051170	import into nucleus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072594	establishment of protein localization to organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0098533	ATPase dependent transmembrane transport complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0098797	plasma membrane protein complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1902495	transmembrane transporter complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1990351	transporter complex	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR013713	XPO2_central	349	453
IPR001494	Importin-beta_N	26	101

External Links

No external refs found!

Bra022860 (EMA1, SAD2, URM9, GIR1)

Expression Profile

Co-expression Networks

Functional Annotation