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  5. Bra022624

Bra022624 (SHI1, HOS5, RCF3, ESR1)


Aliases : SHI1, HOS5, RCF3, ESR1

Description : regulatory protein *(RCF3) of HYL1-phosphorylation


Gene families : OG0011677 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra022624
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_223


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000278 mitotic cell cycle IEP Brassica rapa GO terms from Neighborhoods
CC GO:0000775 chromosome, centromeric region IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003968 RNA-dependent RNA polymerase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005515 protein binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006401 RNA catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006402 mRNA catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007049 cell cycle IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009890 negative regulation of biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009892 negative regulation of metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010629 negative regulation of gene expression IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019439 aromatic compound catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031324 negative regulation of cellular metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034655 nucleobase-containing compound catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044248 cellular catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044270 cellular nitrogen compound catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046700 heterocycle catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0048519 negative regulation of biological process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0048523 negative regulation of cellular process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0098687 chromosomal region IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901361 organic cyclic compound catabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:1990380 K48-linked deubiquitinase activity IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 65 114
IPR004088 KH_dom_type_1 400 464
IPR004088 KH_dom_type_1 169 236
IPR004088 KH_dom_type_1 557 620
No external refs found!