Bra002099 (CPK16, CDPK16, AtCDPK16)

Aliases : CPK16, CDPK16, AtCDPK16

Description : cold-responsive mRNA chaperone *(CSD). RNA chaperone (CSP) of mRNA quality control. EC_2.7 transferase transferring phosphorus-containing group. calcium sensor and kinase *(CPK). CDPK protein kinase

Gene families : OG0003026 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003026_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra002099
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_238

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006468	protein phosphorylation	IEA	Interproscan
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016301	kinase activity	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004371	glycerone kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005096	GTPase activator activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006066	alcohol metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006071	glycerol metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008047	enzyme activator activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019400	alditol metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019751	polyol metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030695	GTPase regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140677	molecular function activator activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000719	Prot_kinase_dom	111	371
IPR002048	EF_hand_dom	499	552
IPR002048	EF_hand_dom	418	479
IPR001878	Znf_CCHC	735	751
IPR001878	Znf_CCHC	818	835
IPR001878	Znf_CCHC	764	779
IPR001878	Znf_CCHC	793	808
IPR001878	Znf_CCHC	848	863
IPR001878	Znf_CCHC	875	891
IPR001878	Znf_CCHC	703	717
IPR002059	CSP_DNA-bd	620	684

External Links

No external refs found!

Bra002099 (CPK16, CDPK16, AtCDPK16)

Expression Profile

Co-expression Networks

Functional Annotation