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  5. Bra020533

Bra020533 (AtRH3, RH3, emb1138)


Aliases : AtRH3, RH3, emb1138

Description : group-II intron splicing RNA helicase *(RH3)


Gene families : OG0007099 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra020533
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_238


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003690 double-stranded DNA binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009451 RNA modification IEP Brassica rapa GO terms from Neighborhoods
MF GO:0009982 pseudouridine synthase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016866 intramolecular transferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030247 polysaccharide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:2001070 starch binding IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 111 285
IPR001650 Helicase_C 322 430
IPR001878 Znf_CCHC 719 734
IPR012562 GUCT 517 617
No external refs found!