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  5. Bra020138

Bra020138 (CRR42)


Aliases : CRR42

Description : assembly factor CRR42 involved in NDH complex assembly


Gene families : OG0004480 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004480_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra020138
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_72


Type GO Term Name Evidence Source
BP GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0000786 nucleosome IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005216 monoatomic ion channel activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005575 cellular_component IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005667 transcription regulator complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006259 DNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006281 DNA repair IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006289 nucleotide-excision repair IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006325 chromatin organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006352 DNA-templated transcription initiation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006974 DNA damage response IEP Brassica rapa GO terms from Neighborhoods
MF GO:0015267 channel activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0022803 passive transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0022834 ligand-gated channel activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0022836 gated channel activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0022839 monoatomic ion gated channel activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0032774 RNA biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0032993 protein-DNA complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033554 cellular response to stress IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051716 cellular response to stimulus IEP Brassica rapa GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex organization IEP Brassica rapa GO terms from Neighborhoods
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR021495 CRR42-like 34 96
No external refs found!