Bra019456 (ATDCL3, DCL3)

Aliases : ATDCL3, DCL3

Description : endoribonuclease *(DCL3)

Gene families : OG0023746 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra019456
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_223

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	RNA endonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	RNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000123	histone acetyltransferase complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0000124	SAGA complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003712	transcription coregulator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003713	transcription coactivator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005643	nuclear pore	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006405	RNA export from nucleus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006406	mRNA export from nucleus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006913	nucleocytoplasmic transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009893	positive regulation of metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015931	nucleobase-containing compound transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016746	acyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016755	aminoacyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019899	enzyme binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0031248	protein acetyltransferase complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048518	positive regulation of biological process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048522	positive regulation of cellular process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0050657	nucleic acid transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0050658	RNA transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051028	mRNA transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051168	nuclear export	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051169	nuclear transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051236	establishment of RNA localization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0070461	SAGA-type complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1902493	acetyltransferase complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1905368	peptidase complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1990234	transferase complex	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003100	PAZ_dom	699	848
IPR000999	RNase_III_dom	1098	1206
IPR000999	RNase_III_dom	889	1024
IPR001650	Helicase_C	297	400

External Links

No external refs found!

Bra019456 (ATDCL3, DCL3)

Expression Profile

Co-expression Networks

Functional Annotation