- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : CASP1
Description : lignin polymerization scaffold protein *(CASP)
Gene families : OG0002734 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002734_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa (Bra) PCC: Bra017260 | |
| Cluster | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_56 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004045 | aminoacyl-tRNA hydrolase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0005047 | signal recognition particle binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0005092 | GDP-dissociation inhibitor activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0005094 | Rho GDP-dissociation inhibitor activity | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0005785 | signal recognition particle receptor complex | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006605 | protein targeting | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006612 | protein targeting to membrane | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0007264 | small GTPase mediated signal transduction | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0007265 | Ras protein signal transduction | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0007266 | Rho protein signal transduction | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0008194 | UDP-glycosyltransferase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0043021 | ribonucleoprotein complex binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0045047 | protein targeting to ER | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0048364 | root development | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0048367 | shoot system development | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0048731 | system development | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0051668 | localization within membrane | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0072657 | protein localization to membrane | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0090150 | establishment of protein localization to membrane | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0099402 | plant organ development | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0140534 | endoplasmic reticulum protein-containing complex | IEP | Brassica rapa GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR006702 | CASP_dom | 65 | 165 |
| No external refs found! |