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Heatmap: Cluster_56 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
- 2.39 2.52 1.68 -0.49 2.59 -0.35 - -0.82 - -0.65 - -1.43 - -0.95 - - - -0.94 -2.17 - -2.32 -0.65 -2.25 -1.93 -1.25 0.93 -2.16 0.74 -2.17 -0.47
Bra001568 (LIK1)
 2.16 - 3.9 - - - - - - - - - 0.0 - - - - 0.72 - - - - 2.21 - - - - -0.32 - - 1.82
Bra003156 (ACT3)
 - - 4.35 - - - - - - - - - - - - - - - - - - - - 3.41 - - - - - - -
- 0.18 2.73 - - - 1.31 1.05 - 0.81 0.69 - -0.07 1.7 - 2.03 - - - - - 1.79 - -0.3 - - -0.23 0.04 - -0.12 -
- - 4.21 - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.65
- 0.39 1.99 0.5 -0.67 0.8 0.44 0.74 -0.21 0.64 0.82 -1.68 0.38 0.64 -0.59 -0.79 0.03 0.93 - -1.59 -1.15 - 1.1 -0.67 -2.65 -2.61 0.15 0.43 -2.5 -0.22 -
- 1.11 2.76 - 1.4 -1.25 -1.5 0.23 - 0.75 - 0.44 1.1 2.86 - -0.9 1.09 - -0.21 0.05 - -1.11 - - - - - - - - -
Bra006910 (LTA3)
 -1.24 2.4 2.37 2.17 -0.97 2.62 -4.34 -3.37 -6.31 -2.51 -5.78 -2.34 -3.54 -0.79 -2.59 -3.89 -5.55 -1.54 -1.55 -2.06 -2.97 -3.64 -0.96 -1.14 -1.06 0.9 -0.81 -0.21 -0.66 -0.73 -1.33
Bra006936 (SYT3)
 - 3.23 3.13 1.14 - 3.42 - - - - - - - - - - - - - - - - - - - - - - - - -
Bra006971 (UGT73D1)
 -0.76 2.46 2.72 0.69 2.66 -0.12 - - -4.12 1.32 -0.93 -0.28 -1.2 -0.69 -0.37 -3.73 -1.05 -4.06 -4.22 -1.34 - -0.5 - - - - -0.43 -2.69 -1.46 -1.08 -2.26
0.03 0.97 1.79 2.25 -0.08 -1.12 -0.77 0.18 -0.32 -0.59 -0.36 0.49 2.46 1.02 -0.03 -1.34 0.21 -0.84 -4.01 -0.68 -1.35 -4.08 -3.9 - - - - -3.73 -1.7 -1.21 -1.37
Bra008173 (FAB1)
 - - 3.13 - - 0.92 2.67 0.91 - - - - - - - 1.1 - - - 0.97 - - 1.0 - - 0.91 1.09 - - 1.01 -
Bra010650 (AtDOB4)
 - - 4.62 - 2.09 1.12 - - - - - - - - - - - - - - - - - - - - - - - - -
Bra010872 (PG45)
 0.99 -1.3 1.54 -0.63 1.16 -0.38 -0.62 0.84 -0.55 - -0.08 - -0.04 0.82 1.04 1.02 -1.23 -0.13 -0.53 - 0.24 -2.54 - 1.27 -1.35 -2.37 -0.07 0.49 0.13 -1.52 -0.03
Bra010962 (KR)
 1.78 1.32 2.21 2.23 1.08 0.51 0.1 0.32 -0.63 -0.05 -2.18 0.08 -0.3 - -1.87 -0.24 -0.96 -0.45 -0.62 -2.0 0.49 0.6 - - - - - - - - -
Bra011065 (TIE1)
 - 2.37 3.65 - - - 1.28 0.41 - - - - -0.28 -0.15 - 1.32 - 1.33 - - - - - - - 1.45 - - - - -
- - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra014444 (AHL11)
 0.22 0.95 1.3 0.32 0.58 -0.61 -2.59 -0.84 -0.86 -0.41 -0.25 -1.13 0.18 0.91 -0.61 -0.64 -0.3 0.34 -2.12 -1.31 -1.1 -1.03 -0.17 0.01 0.1 0.83 0.15 0.36 0.83 0.09 -0.38
-9.6 -7.6 4.79 -20.21 1.74 - -10.62 -19.83 - - -26.18 -16.8 - -26.76 -22.86 - - -10.77 - -18.11 -27.49 -9.01 - - -19.19 - -19.32 -21.64 -15.71 -23.35 -13.3
0.45 0.08 1.13 0.02 -0.52 0.41 0.08 -1.31 0.65 0.85 -0.07 -1.43 0.26 -0.46 -0.36 0.56 -0.04 0.23 -0.91 -2.92 -1.78 -1.0 0.92 -1.48 -1.02 -0.98 -0.79 -0.53 0.69 1.36 -0.45
Bra015751 (ATL8)
 0.59 0.23 1.1 0.81 0.14 -2.48 -0.18 -0.2 0.08 0.17 0.03 0.04 1.58 -1.38 -1.0 0.16 0.41 1.01 -1.01 -0.55 -1.33 -0.82 -0.03 -4.4 -1.37 -0.55 -0.03 -1.9 -1.19 0.3 0.73
Bra016000 (scpl5)
 0.33 -1.57 3.08 -0.01 1.91 -0.87 - -0.91 -0.43 -0.93 -1.98 - -1.62 - - -1.66 -1.77 2.56 0.23 -1.79 -0.33 1.02 - - - 0.07 - - -0.74 -1.93 -0.79
0.45 0.96 2.07 1.16 0.32 -0.21 -0.55 -0.56 0.77 0.56 0.6 0.33 -0.72 -2.49 -2.03 -0.33 -0.32 -4.69 0.44 0.29 -0.89 0.18 -0.57 -2.54 -0.81 -0.09 -0.95 -1.0 -0.34 -1.2 -1.65
Bra016403 (GONST5)
 - - 1.84 -0.46 1.18 1.31 - -1.61 - - -1.66 1.22 - -1.37 -0.18 0.37 0.63 -0.23 0.02 1.41 -1.43 - 1.85 1.0 - - -1.5 -1.23 0.29 0.22 0.27
Bra016428 (WAK1)
 1.76 -0.68 4.08 -0.52 1.78 -3.36 -4.1 - -4.11 - -2.81 -3.75 -1.46 -1.53 - -3.69 -3.82 0.92 - - - -3.38 -0.02 -3.5 -3.95 -2.35 - -1.67 -0.92 -1.5 -3.74
Bra017260 (CASP1)
 - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra017969 (DIN11)
 -0.15 1.23 3.6 2.21 - -7.45 -2.93 -0.65 -5.46 -2.45 -5.5 -4.07 1.34 - -6.1 -3.06 -3.06 1.91 -6.24 -6.32 -7.35 -5.93 0.01 -4.52 -4.51 -1.72 -2.68 - -7.2 -0.47 0.13
Bra019056 (NZZ)
 1.45 0.97 2.8 2.48 1.37 -0.01 0.54 - - - - - 2.21 - - - - 1.29 - - - - -0.97 - - - - - - - 0.26
- 2.61 3.09 - - - - - - - - - - - - - 0.91 - - - - - 1.73 2.57 - - - - - 0.78 1.81
Bra019443 (TEK)
 - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra019871 (FBS1)
 1.67 0.34 2.14 0.96 0.12 - - - - -1.0 0.12 0.18 2.52 - -0.67 -0.68 -0.81 0.21 - 0.19 - - 0.67 0.63 - - - - 0.19 0.11 0.21
Bra020376 (MES18)
 1.02 -0.02 1.53 1.01 0.22 -1.19 0.52 -1.28 -2.53 -0.28 -0.7 -0.48 -1.01 -2.32 -2.03 -1.39 -1.44 1.21 -0.84 -1.81 -1.69 -1.27 -2.7 -0.37 -0.5 -0.37 -0.05 0.16 0.79 1.52 1.4
Bra020432 (XTR6)
 2.19 2.24 3.05 3.16 - - - -1.33 - - - - - - - - - 1.0 - - - 0.2 - - - -0.11 - - - - -
-0.34 2.81 2.47 1.98 0.92 2.8 -3.68 -3.28 -0.93 -0.04 -0.38 -4.45 - -1.58 -4.02 -2.28 -2.58 -2.93 -3.1 -0.83 -1.9 -4.54 -2.0 -5.64 - -5.49 -3.93 - - -4.48 -3.78
1.57 - 2.13 1.48 - - - - - - -1.16 - -1.39 - - - - - - - - - 2.88 0.63 0.86 0.39 0.54 0.06 -0.07 1.11 1.25
Bra024083 (CNGC17)
 - - 3.03 - - - - - 2.3 - - - 2.25 - - - - 2.07 - - 2.14 2.19 - - - - - - - - -
Bra024464 (OFP7)
 -0.15 -1.7 1.03 -2.1 0.46 -1.97 0.09 - 0.42 - 0.31 1.23 1.51 - -1.6 -0.04 0.68 1.08 -0.78 0.9 - -0.85 1.04 0.14 -1.71 - - 0.51 0.49 0.45 0.44
1.46 1.42 2.38 1.13 -1.87 -0.09 -0.66 0.5 -0.07 -0.94 -0.62 0.12 1.63 -0.15 -0.81 -1.54 -1.21 -1.67 -5.56 -2.39 -2.16 -1.02 1.5 -1.9 -4.43 -3.11 -1.5 -2.87 -0.71 -1.74 -1.11
- - 4.47 - - - - - - - - - - - - - - - - - - - - - - - - - - 3.14 -
1.85 -1.78 2.66 -0.25 1.84 0.29 0.98 -0.28 - - 0.03 0.37 -0.73 1.43 -1.67 -1.78 -0.31 0.64 - -0.18 -1.8 - - -1.99 -1.9 0.37 - -1.86 - - -0.93
- - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - 4.18 - - 2.72 - - - - - - - - - - - 2.64 - - - - - - - - - - - - -
Bra028242 (RECQSIM)
 - 2.86 4.51 - - - -1.11 -1.04 - - - - - - - - - - - - - - - - - - - - - - -
Bra028620 (HEC3)
 - 1.48 2.65 2.77 1.23 - - - 0.03 0.19 - 0.53 0.41 - - - 1.22 - - - - - - - 2.46 - - - - - -
Bra029874 (CEV1)
 -3.54 1.5 2.67 -0.46 1.11 -1.14 -3.65 -5.11 -0.97 - -3.4 -1.93 -4.8 -0.6 -2.06 -2.72 -3.28 -1.36 -2.23 -3.35 -1.93 - 2.26 1.1 1.12 -2.34 -0.79 1.41 0.17 -0.3 -0.33
Bra030078 (PUP3)
 - - 3.22 - 0.94 - - - - 1.79 1.84 - 1.93 - - 1.03 - 2.79 - - - - - - - - - - - - -
Bra030979 (MINI3)
 - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra031052 (IQD30)
 - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra031110 (TIE2)
 - - 3.62 - - 0.9 - - - - - - - - 2.13 - - - - - - - 3.0 - - - - 2.16 - - -
- - 4.13 - - - - - - - - - - - - - - - - - - - 3.75 - - - - - - - -
0.8 2.63 1.8 2.48 0.99 2.46 0.15 -1.64 -1.26 0.91 0.83 -5.46 - - -1.31 - -2.65 -6.93 -7.1 -1.71 -4.65 -3.55 - - - - - - - - -
Bra032767 (AGL84)
 -1.52 0.03 2.11 - 1.69 - -3.0 -2.94 -1.24 -0.99 - - -1.73 - -2.63 -1.67 -2.72 -0.99 0.23 - 0.87 -2.92 1.22 -1.38 1.57 -0.22 0.57 0.82 1.32 1.57 0.1
Bra034655 (DEG4)
 - 1.4 3.18 1.42 - - - - - 2.14 - - - - - - - - 2.5 - - - 0.48 0.35 - - - - - - 1.98
0.32 0.3 1.86 -0.01 0.42 -0.2 - - 1.26 0.49 - -1.04 0.21 - - -0.94 -1.07 0.37 -0.71 - -1.11 -1.22 1.43 - -1.16 - 0.0 -1.13 1.52 1.68 0.85
Bra036400 (WRKY12)
 - - 3.13 - 1.48 2.11 - - - 0.44 - - - - - - - 3.15 - - - - - - - - - - 1.68 - 0.76
- - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra038954 (CDR1)
 - - 3.26 3.06 - - - - - 2.19 - - - - - 1.77 - - - - - - - - 0.89 - 0.75 - - 0.7 -
- - 4.39 2.8 - - - - - - - - - - - - - 1.61 - - - - - - - - - - - - -
- - 3.79 - - - 2.44 - - - - 2.12 - - - - - - - - - - - - - - - - - - 2.89

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.