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  5. Bra016589

Bra016589 (PGDH2, PGDH)


Aliases : PGDH2, PGDH

Description : phosphoglycerate dehydrogenase. EC_1.1 oxidoreductase acting on CH-OH group of donor


Gene families : OG0031496 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra016589
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_141


Type GO Term Name Evidence Source
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA Interproscan
MF GO:0051287 NAD binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Brassica rapa GO terms from Neighborhoods
CC GO:0000786 nucleosome IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005787 signal peptidase complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006308 DNA catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006325 chromatin organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006465 signal peptide processing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006790 sulfur compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007275 multicellular organism development IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009555 pollen development IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016226 iron-sulfur cluster assembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016485 protein processing IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016859 cis-trans isomerase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0018208 peptidyl-proline modification IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019439 aromatic compound catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031163 metallo-sulfur cluster assembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0032501 multicellular organismal process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0032502 developmental process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0032993 protein-DNA complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034655 nucleobase-containing compound catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044248 cellular catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044270 cellular nitrogen compound catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046700 heterocycle catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0048229 gametophyte development IEP Brassica rapa GO terms from Neighborhoods
BP GO:0048856 anatomical structure development IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051604 protein maturation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Brassica rapa GO terms from Neighborhoods
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901361 organic cyclic compound catabolic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:1905368 peptidase complex IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR006140 D-isomer_DH_NAD-bd 184 359
IPR045626 PGDH_ASB_dom 403 518
IPR002912 ACT_dom 550 607
IPR006139 D-isomer_2_OHA_DH_cat_dom 82 391
No external refs found!