Bra016517 (IAA22, ARF19, ARF11)

Aliases : IAA22, ARF19, ARF11

Description : ARF-type transcription factor. auxin signal mediator *(ARF7/ARF19)

Gene families : OG0000953 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000953_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra016517
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_224

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005216	monoatomic ion channel activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0010333	terpene synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0022834	ligand-gated channel activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0022836	gated channel activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0022839	monoatomic ion gated channel activity	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR033389	AUX/IAA_dom	880	968
IPR003340	B3_DNA-bd	126	214
IPR010525	ARF_dom	242	324

External Links

No external refs found!

Bra016517 (IAA22, ARF19, ARF11)

Expression Profile

Co-expression Networks

Functional Annotation