Bra013550 (EMB1989, NRPB2, RPB2)

Aliases : EMB1989, NRPB2, RPB2

Description : component *(NRPB2) of RNA polymerase II complex

Gene families : OG0000769 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000769_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra013550
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_257

Target	Alias	Description	ECC score	Gene Family Method	Actions
Mp4g21160.1	EMB1989, NRPB2, RPB2	component *(NRPB2) of RNA polymerase II complex	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.01394	EMB1989, NRPB2, RPB2	component *(NRPB2) of RNA polymerase II complex	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004474	malate synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006097	glyoxylate cycle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006366	transcription by RNA polymerase II	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006479	protein methylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008213	protein alkylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008270	zinc ion binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016570	histone modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016571	histone methylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0017069	snRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0017070	U6 snRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018022	peptidyl-lysine methylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0018024	obsolete histone lysine N-methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018205	peptidyl-lysine modification	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030623	U5 snRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034968	histone lysine methylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043169	cation binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043414	macromolecule methylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046487	glyoxylate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046872	metal ion binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046912	acyltransferase activity, acyl groups converted into alkyl on transfer	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007645	RNA_pol_Rpb2_3	473	537
IPR007642	RNA_pol_Rpb2_2	209	400
IPR007120	DNA-dir_RNAP_su2_dom	716	1086
IPR007641	RNA_pol_Rpb2_7	1088	1179
IPR007647	RNA_pol_Rpb2_5	658	709
IPR007646	RNA_pol_Rpb2_4	572	633
IPR007644	RNA_pol_bsu_protrusion	39	448

External Links

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Bra013550 (EMB1989, NRPB2, RPB2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation