Bra013458 (SVR11, RAB8D,...)


Aliases : SVR11, RAB8D, ATRAB8D, ATRABE1B, RABE1b

Description : translation elongation factor *(EF-Tu)


Gene families : OG0002164 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002164_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra013458
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_41

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_4_77381.1 SVR11, RAB8D,... translation elongation factor *(EF-Tu) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Mp1g03870.1 SVR11, RAB8D,... translation elongation factor *(EF-Tu) 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004615 phosphomannomutase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006082 organic acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006091 generation of precursor metabolites and energy IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006612 protein targeting to membrane IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006613 cotranslational protein targeting to membrane IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006629 lipid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006790 sulfur compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008152 metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008312 7S RNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009225 nucleotide-sugar metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009226 nucleotide-sugar biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009298 GDP-mannose biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0009512 cytochrome b6f complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0009521 photosystem IEP Brassica rapa GO terms from Neighborhoods
CC GO:0009523 photosystem II IEP Brassica rapa GO terms from Neighborhoods
CC GO:0009654 photosystem II oxygen evolving complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010206 photosystem II repair IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010207 photosystem II assembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015979 photosynthesis IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016226 iron-sulfur cluster assembly IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016829 lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016832 aldehyde-lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016843 amine-lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016844 strictosidine synthase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016853 isomerase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016859 cis-trans isomerase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016860 intramolecular oxidoreductase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016874 ligase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019673 GDP-mannose metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019751 polyol metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019752 carboxylic acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0019898 extrinsic component of membrane IEP Brassica rapa GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0030091 protein repair IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031163 metallo-sulfur cluster assembly IEP Brassica rapa GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034311 diol metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034312 diol biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042558 pteridine-containing compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043436 oxoacid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044281 small molecule metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0045047 protein targeting to ER IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046146 tetrahydrobiopterin metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046165 alcohol biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046173 polyol biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Brassica rapa GO terms from Neighborhoods
CC GO:0048500 signal recognition particle IEP Brassica rapa GO terms from Neighborhoods
MF GO:0051536 iron-sulfur cluster binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0051540 metal cluster binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0070069 cytochrome complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0070972 protein localization to endoplasmic reticulum IEP Brassica rapa GO terms from Neighborhoods
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Brassica rapa GO terms from Neighborhoods
CC GO:0098796 membrane protein complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0098809 nitrite reductase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:1902494 catalytic complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:1990204 oxidoreductase complex IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000795 T_Tr_GTP-bd_dom 71 272
IPR004161 EFTu-like_2 296 364
IPR004160 Transl_elong_EFTu/EF1A_C 369 468
No external refs found!