Bra013038 (ATTRN1, TRN1, IMB2)

Aliases : ATTRN1, TRN1, IMB2

Description : assembly factor (TRN1) of RNA-induced silencing complex (RISC) assembly. nucleocytoplasmic import karyopherin *(IMB2)

Gene families : OG0004561 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004561_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra013038
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_32

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bra002011	ATTRN1, TRN1, IMB2	assembly factor (TRN1) of RNA-induced silencing complex...	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
MF	GO:0031267	small GTPase binding	IEA	Interproscan
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0051020	GTPase binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005244	voltage-gated monoatomic ion channel activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005253	monoatomic anion channel activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005254	chloride channel activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006820	monoatomic anion transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006821	chloride transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008037	cell recognition	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008308	voltage-gated monoatomic anion channel activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008509	monoatomic anion transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009056	catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009057	macromolecule catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015698	inorganic anion transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0022832	voltage-gated channel activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0022836	gated channel activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0022839	monoatomic ion gated channel activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030117	membrane coat	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030118	clathrin coat	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030120	vesicle coat	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030125	clathrin vesicle coat	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030132	clathrin coat of coated pit	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048544	recognition of pollen	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0098797	plasma membrane protein complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901575	organic substance catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901702	salt transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001494	Importin-beta_N	35	101

External Links

No external refs found!

Bra013038 (ATTRN1, TRN1, IMB2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation