Bra012912

Description : pre-40S ribosomal-subunit proteome nuclear export factor *(Ltv1)

Gene families : OG0004957 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004957_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra012912
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_94

Target	Alias	Description	ECC score	Gene Family Method	Actions
Lsat_1_v5_gn_4_116341.1	No alias	pre-40S ribosomal-subunit proteome nuclear export factor *(Ltv1)	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
BP	GO:0042274	ribosomal small subunit biogenesis	IEA	Interproscan
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000154	rRNA modification	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0000166	nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003724	RNA helicase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003922	GMP synthase (glutamine-hydrolyzing) activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005488	binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006177	GMP biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006807	nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008131	primary amine oxidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008134	transcription factor binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008168	methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008173	RNA methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008649	rRNA methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0030490	maturation of SSU-rRNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031167	rRNA methylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031267	small GTPase binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044237	cellular metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046037	GMP metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0048038	quinone binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051020	GTPase binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0070037	rRNA (pseudouridine) methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0070475	rRNA base methylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0090730	Las1 complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1902555	endoribonuclease complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1902911	protein kinase complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1905348	endonuclease complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1905354	exoribonuclease complex	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007307	Ltv1	8	281

External Links

No external refs found!

Bra012912

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation