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  5. Bra012659

Bra012659 (HLN)


Aliases : HLN

Description : regulatory protein *(RGG) of mRNA quality control


Gene families : OG0008119 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra012659
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_94

Target Alias Description ECC score Gene Family Method Actions
Bra021044 HLN regulatory protein *(RGG) of mRNA quality control 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra040161 HLN regulatory protein *(RGG) of mRNA quality control 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000469 obsolete cleavage involved in rRNA processing IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003743 translation initiation factor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003883 CTP synthase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006413 translational initiation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006753 nucleoside phosphate metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008135 translation factor activity, RNA binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009117 nucleotide metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009165 nucleotide biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016874 ligase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019637 organophosphate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0045182 translation regulator activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0090407 organophosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR006861 HABP4_PAIRBP1-bd 131 234
IPR019084 STM1-like_N 1 64
No external refs found!