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  5. Mp3g05200.1

Mp3g05200.1 (TRM4B, AtTRM4b)


Aliases : TRM4B, AtTRM4b

Description : tRNA cytidine-methyltransferase *(TRM4). EC_2.1 transferase transferring one-carbon group


Gene families : OG0052091 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha (Mpo) PCC: Mp3g05200.1
Cluster Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_32


Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0003743 translation initiation factor activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0003924 GTPase activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0004674 protein serine/threonine kinase activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0004743 pyruvate kinase activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0004814 arginine-tRNA ligase activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0005488 binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0005525 GTP binding IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0005575 cellular_component IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0005634 nucleus IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0005737 cytoplasm IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0005956 protein kinase CK2 complex IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006082 organic acid metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006325 chromatin organization IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006418 tRNA aminoacylation for protein translation IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006420 arginyl-tRNA aminoacylation IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006520 amino acid metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0008135 translation factor activity, RNA binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0008170 N-methyltransferase activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0008173 RNA methyltransferase activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0008175 tRNA methyltransferase activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0016462 pyrophosphatase activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0016874 ligase activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0019001 guanyl nucleotide binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0019207 kinase regulator activity IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0019752 carboxylic acid metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0019887 protein kinase regulator activity IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0030554 adenyl nucleotide binding IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0030684 preribosome IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0030688 preribosome, small subunit precursor IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0030955 potassium ion binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0031420 alkali metal ion binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0032561 guanyl ribonucleotide binding IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0042254 ribosome biogenesis IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0043038 amino acid activation IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0043039 tRNA aminoacylation IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0043227 membrane-bounded organelle IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0043231 intracellular membrane-bounded organelle IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0043436 oxoacid metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0044281 small molecule metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0045182 translation regulator activity IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex organization IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0140098 catalytic activity, acting on RNA IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0140101 catalytic activity, acting on a tRNA IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:1902554 serine/threonine protein kinase complex IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:1902911 protein kinase complex IEP Marchantia polymorpha GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001678 MeTrfase_RsmB/NOP2 182 368
No external refs found!