Mp3g03990.1 (RCA)

Aliases : RCA

Description : ATP-dependent activase involved in RuBisCo regulation

Gene families : OG0001130 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001130_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp3g03990.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_15

Target	Alias	Description	ECC score	Gene Family Method	Actions
Lsat_1_v5_gn_2_118741.1	RCA	ATP-dependent activase involved in RuBisCo regulation	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003824	catalytic activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004089	carbonate dehydratase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004371	glycerone kinase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004618	phosphoglycerate kinase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004751	ribose-5-phosphate isomerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004820	glycine-tRNA ligase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006066	alcohol metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006071	glycerol metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006426	glycyl-tRNA aminoacylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006520	amino acid metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009052	pentose-phosphate shunt, non-oxidative branch	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0009512	cytochrome b6f complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0009521	photosystem	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0009523	photosystem II	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0010277	chlorophyllide a oxygenase [overall] activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0015979	photosynthesis	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016491	oxidoreductase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016703	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016774	phosphotransferase activity, carboxyl group as acceptor	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016836	hydro-lyase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0019400	alditol metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0019751	polyol metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0019752	carboxylic acid metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0031072	heat shock protein binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0034311	diol metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0034312	diol biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0034357	photosynthetic membrane	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0042651	thylakoid membrane	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043038	amino acid activation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043039	tRNA aminoacylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043436	oxoacid metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0044237	cellular metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0046165	alcohol biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0046173	polyol biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0051536	iron-sulfur cluster binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0051540	metal cluster binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0055114	obsolete oxidation-reduction process	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0070069	cytochrome complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0098796	membrane protein complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:1990204	oxidoreductase complex	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	163	305

External Links

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Mp3g03990.1 (RCA)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation