- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : not classified
Gene families : OG0006775 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa (Bra) PCC: Bra012085 | |
| Cluster | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_99 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0002097 | tRNA wobble base modification | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0002098 | tRNA wobble uridine modification | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004478 | methionine adenosyltransferase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004637 | phosphoribosylamine-glycine ligase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0005680 | anaphase-promoting complex | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006144 | purine nucleobase metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006396 | RNA processing | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006400 | tRNA modification | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006508 | proteolysis | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006556 | S-adenosylmethionine biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0008033 | tRNA processing | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0008233 | peptidase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0008270 | zinc ion binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009112 | nucleobase metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009113 | purine nucleobase biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009890 | negative regulation of biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0010498 | proteasomal protein catabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0016579 | protein deubiquitination | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016728 | oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016746 | acyltransferase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016755 | aminoacyltransferase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0030163 | protein catabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0031047 | regulatory ncRNA-mediated gene silencing | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0031145 | anaphase-promoting complex-dependent catabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0031324 | negative regulation of cellular metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0031327 | negative regulation of cellular biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0033588 | elongator holoenzyme complex | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0043169 | cation binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0043687 | post-translational protein modification | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0044272 | sulfur compound biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0046112 | nucleobase biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0046500 | S-adenosylmethionine metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0046872 | metal ion binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0046914 | transition metal ion binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0061731 | ribonucleoside-diphosphate reductase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0070646 | protein modification by small protein removal | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0097602 | cullin family protein binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0101005 | deubiquitinase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0140535 | intracellular protein-containing complex | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:1902494 | catalytic complex | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:1990234 | transferase complex | IEP | Brassica rapa GO terms from Neighborhoods |
| No external refs found! |