Bra011936 (KCS12)

Aliases : KCS12

Description : 3-ketoacyl-CoA synthase *(KCS)

Gene families : OG0004719 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004719_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra011936
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_81

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bra018684	KCS3	3-ketoacyl-CoA synthase *(KCS)	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006631	fatty acid metabolic process	None	Extended
BP	GO:0006633	fatty acid biosynthetic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016746	acyltransferase activity	None	Extended
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEA	Interproscan
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003779	actin binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003864	3-methyl-2-oxobutanoate hydroxymethyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003872	6-phosphofructokinase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0005975	carbohydrate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006694	steroid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006766	vitamin metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006813	potassium ion transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0007010	cytoskeleton organization	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008092	cytoskeletal protein binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008202	steroid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008236	serine-type peptidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008443	phosphofructokinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009110	vitamin biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009892	negative regulation of metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015939	pantothenate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015940	pantothenate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016125	sterol metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016126	sterol biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0017171	serine hydrolase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019200	carbohydrate kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031047	regulatory ncRNA-mediated gene silencing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071805	potassium ion transmembrane transport	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0098797	plasma membrane protein complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR013747	ACP_syn_III_C	297	378
IPR013601	FAE1_typ3_polyketide_synth	2	267

External Links

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Bra011936 (KCS12)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation