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Bra011849 (alpha1-COP)


Aliases : alpha1-COP

Description : subunit alpha of coat protein complex


Gene families : OG0000468 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000468_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra011849
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_155

Target Alias Description ECC score Gene Family Method Actions
Spov3_chr5.01577 No alias subunit alpha of coat protein complex 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030126 COPI vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Brassica rapa GO terms from Neighborhoods
CC GO:0017119 Golgi transport complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0048193 Golgi vesicle transport IEP Brassica rapa GO terms from Neighborhoods
CC GO:0099023 vesicle tethering complex IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR010714 Coatomer_asu_C 782 1188
IPR006692 Coatomer_WD-assoc_reg 308 735
IPR001680 WD40_rpt 45 79
IPR001680 WD40_rpt 208 243
IPR001680 WD40_rpt 84 121
IPR001680 WD40_rpt 126 163
No external refs found!