Mp1g29110.1 (SPF30)

Aliases : SPF30

Description : scaffold component of spliceosomal snRNP assembly complex

Gene families : OG0018516 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp1g29110.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_84

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003682	chromatin binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004402	histone acetyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004527	exonuclease activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005096	GTPase activator activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005849	mRNA cleavage factor complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006355	regulation of DNA-templated transcription	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006378	mRNA polyadenylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006473	protein acetylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006474	N-terminal protein amino acid acetylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006475	internal protein amino acid acetylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0007165	signal transduction	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0007264	small GTPase mediated signal transduction	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008270	zinc ion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016161	beta-amylase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016573	histone acetylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0017196	N-terminal peptidyl-methionine acetylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0018193	peptidyl-amino acid modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0018206	peptidyl-methionine modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0018995	host cellular component	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0030234	enzyme regulator activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0030695	GTPase regulator activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031123	RNA 3'-end processing	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031124	mRNA 3'-end processing	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0031248	protein acetyltransferase complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031365	N-terminal protein amino acid modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0031414	N-terminal protein acetyltransferase complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0031417	NatC complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0033643	host cell part	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0033646	host intracellular part	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0033647	host intracellular organelle	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0042025	host cell nucleus	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043543	protein acylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0050789	regulation of biological process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0050794	regulation of cellular process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051252	regulation of RNA metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0065007	biological regulation	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0098772	molecular function regulator activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140993	histone modifying activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:1902493	acetyltransferase complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR010304	SMN_Tudor	93	173

External Links

No external refs found!

Mp1g29110.1 (SPF30)

Expression Profile

Co-expression Networks

Functional Annotation