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  5. Bra011816

Bra011816 (AtTRM4a, TRM4A)


Aliases : AtTRM4a, TRM4A

Description : EC_2.1 transferase transferring one-carbon group. tRNA cytidine-methyltransferase *(TRM4)


Gene families : OG0004913 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004913_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra011816
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_36


Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0000315 organellar large ribosomal subunit IEP Brassica rapa GO terms from Neighborhoods
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003924 GTPase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004177 aminopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005525 GTP binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005741 mitochondrial outer membrane IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005762 mitochondrial large ribosomal subunit IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006352 DNA-templated transcription initiation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008235 metalloexopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008237 metallopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008238 exopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0015934 large ribosomal subunit IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016462 pyrophosphatase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019001 guanyl nucleotide binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0019867 outer membrane IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030145 manganese ion binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0031090 organelle membrane IEP Brassica rapa GO terms from Neighborhoods
CC GO:0031966 mitochondrial membrane IEP Brassica rapa GO terms from Neighborhoods
CC GO:0031968 organelle outer membrane IEP Brassica rapa GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0032561 guanyl ribonucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0044391 ribosomal subunit IEP Brassica rapa GO terms from Neighborhoods
MF GO:0070006 metalloaminopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0098588 bounding membrane of organelle IEP Brassica rapa GO terms from Neighborhoods
CC GO:0098798 mitochondrial protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140223 general transcription initiation factor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001678 MeTrfase_RsmB/NOP2 170 347
No external refs found!