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Aliases : PDM3, EMB3140
Description : plastidial splicing factor *(PDM3)
Gene families : OG0049146 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Marchantia polymorpha (Mpo) PCC: Mp1g24450.1 | |
| Cluster | Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_34 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000439 | transcription factor TFIIH core complex | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| MF | GO:0001671 | ATPase activator activity | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| MF | GO:0003747 | translation release factor activity | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| MF | GO:0004175 | endopeptidase activity | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0006281 | DNA repair | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0006289 | nucleotide-excision repair | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0006298 | mismatch repair | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0006415 | translational termination | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0006450 | regulation of translational fidelity | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0006605 | protein targeting | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0006612 | protein targeting to membrane | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0006886 | intracellular protein transport | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0006974 | DNA damage response | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| MF | GO:0008079 | translation termination factor activity | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0008104 | protein localization | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0009235 | cobalamin metabolic process | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0009236 | cobalamin biosynthetic process | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0015031 | protein transport | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0016485 | protein processing | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| MF | GO:0016852 | sirohydrochlorin cobaltochelatase activity | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| CC | GO:0019898 | extrinsic component of membrane | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0022411 | cellular component disassembly | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| MF | GO:0030983 | mismatched DNA binding | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0032984 | protein-containing complex disassembly | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0033036 | macromolecule localization | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0033554 | cellular response to stress | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0045047 | protein targeting to ER | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0045184 | establishment of protein localization | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0046855 | obsolete inositol phosphate dephosphorylation | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0046907 | intracellular transport | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0051604 | protein maturation | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0051641 | cellular localization | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0051649 | establishment of localization in cell | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0051668 | localization within membrane | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0051716 | cellular response to stimulus | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| MF | GO:0060590 | ATPase regulator activity | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0065008 | regulation of biological quality | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0070727 | cellular macromolecule localization | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0071586 | CAAX-box protein processing | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0071702 | organic substance transport | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0071705 | nitrogen compound transport | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0072657 | protein localization to membrane | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| BP | GO:0090150 | establishment of protein localization to membrane | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | Marchantia polymorpha GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | 432 | 461 |
| IPR002885 | Pentatricopeptide_rpt | 260 | 308 |
| IPR002885 | Pentatricopeptide_rpt | 365 | 412 |
| IPR002885 | Pentatricopeptide_rpt | 579 | 603 |
| IPR002885 | Pentatricopeptide_rpt | 648 | 671 |
| IPR002885 | Pentatricopeptide_rpt | 509 | 527 |
| IPR002885 | Pentatricopeptide_rpt | 334 | 363 |
| IPR002885 | Pentatricopeptide_rpt | 614 | 638 |
| IPR002885 | Pentatricopeptide_rpt | 179 | 239 |
| No external refs found! |