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  5. Bra011655

Bra011655 (CSDP1, AtCSP1, CSP1)


Aliases : CSDP1, AtCSP1, CSP1

Description : cold-responsive mRNA chaperone *(CSD). RNA chaperone (CSP) of mRNA quality control


Gene families : OG0013995 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra011655
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_210


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003743 translation initiation factor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006413 translational initiation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006418 tRNA aminoacylation for protein translation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008135 translation factor activity, RNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043038 amino acid activation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043039 tRNA aminoacylation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0045182 translation regulator activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140101 catalytic activity, acting on a tRNA IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 183 199
IPR001878 Znf_CCHC 151 165
IPR001878 Znf_CCHC 121 135
IPR001878 Znf_CCHC 266 282
IPR001878 Znf_CCHC 233 247
IPR001878 Znf_CCHC 207 223
IPR001878 Znf_CCHC 99 114
IPR002059 CSP_DNA-bd 12 77
No external refs found!