Mp1g05970.1 (ATRNL, ZYG3, AtRLG1, RLG1, RNL)

Aliases : ATRNL, ZYG3, AtRLG1, RLG1, RNL

Description : multifunctional tRNA ligase *(RLG1)

Gene families : OG0047546 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp1g05970.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_144

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003972	RNA ligase (ATP) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
MF	GO:0008452	RNA ligase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004559	alpha-mannosidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004668	protein-arginine deiminase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005534	galactose binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005575	cellular_component	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005787	signal peptidase complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0005975	carbohydrate metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006066	alcohol metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006465	signal peptide processing	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006576	biogenic amine metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006595	polyamine metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006596	polyamine biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006835	dicarboxylic acid transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008897	holo-[acyl-carrier-protein] synthase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009250	glucan biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009308	amine metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009309	amine biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009445	putrescine metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009446	putrescine biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0015711	organic anion transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0015740	C4-dicarboxylate transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0015743	malate transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0015849	organic acid transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0015923	mannosidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0015924	mannosyl-oligosaccharide mannosidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0016020	membrane	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0016272	prefoldin complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016485	protein processing	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016740	transferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016757	glycosyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016759	cellulose synthase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016780	phosphotransferase activity, for other substituted phosphate groups	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016854	racemase and epimerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0019751	polyol metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0030173	obsolete integral component of Golgi membrane	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0030243	cellulose metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0030244	cellulose biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0042401	biogenic amine biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043647	inositol phosphate metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0044042	glucan metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0046165	alcohol biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0046173	polyol biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0046527	glucosyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0046942	carboxylic acid transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0048029	monosaccharide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051273	beta-glucan metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0110165	cellular anatomical entity	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:1905368	peptidase complex	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR015965	tRNA_lig_PDEase	975	1132

External Links

No external refs found!

Mp1g05970.1 (ATRNL, ZYG3, AtRLG1, RLG1, RNL)

Expression Profile

Co-expression Networks

Functional Annotation