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  5. Spov3_chr6.01753

Spov3_chr6.01753 (TTN7, SMC3)


Aliases : TTN7, SMC3

Description : component *(SMC3/TTN7) of cohesin regulator complex


Gene families : OG0003575 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003575_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr6.01753
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_156

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_2_27520.1 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004177 aminopeptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004525 ribonuclease III activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005096 GTPase activator activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005215 transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005347 ATP transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005471 ATP:ADP antiporter activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0005634 nucleus IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006862 nucleotide transport IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008047 enzyme activator activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008235 metalloexopeptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008237 metallopeptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008514 organic anion transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0015215 nucleotide transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0015217 ADP transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0015399 primary active transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0015748 organophosphate ester transport IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0015931 nucleobase-containing compound transport IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0016020 membrane IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016042 lipid catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0016459 myosin complex IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016887 ATP hydrolysis activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0022804 active transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0022834 ligand-gated channel activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0022857 transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030120 vesicle coat IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030127 COPII vesicle coat IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0043227 membrane-bounded organelle IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0043231 intracellular membrane-bounded organelle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0050789 regulation of biological process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0050794 regulation of cellular process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051726 regulation of cell cycle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0065007 biological regulation IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0070006 metalloaminopeptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140223 general transcription initiation factor activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140359 ABC-type transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 3 1181
IPR010935 SMC_hinge 522 633
No external refs found!