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  5. Spov3_chr6.00705

Spov3_chr6.00705 (RDR2, SMD1, AtRDR2)


Aliases : RDR2, SMD1, AtRDR2

Description : RNA polymerase-IV-dependent siRNA polymerase *(RDR2)


Gene families : OG0015544 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr6.00705
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_172

Target Alias Description ECC score Gene Family Method Actions
Bra035249 RDR2, SMD1, AtRDR2 RNA polymerase-IV-dependent siRNA polymerase *(RDR2) 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0000166 nucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0000786 nucleosome IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003677 DNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003887 DNA-directed DNA polymerase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004674 protein serine/threonine kinase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005488 binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005515 protein binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0005984 disaccharide metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0005985 sucrose metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006260 DNA replication IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006325 chromatin organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006351 DNA-templated transcription IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0007088 regulation of mitotic nuclear division IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0007093 mitotic cell cycle checkpoint signaling IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0007094 mitotic spindle assembly checkpoint signaling IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0007346 regulation of mitotic cell cycle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008037 cell recognition IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008150 biological_process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009311 oligosaccharide metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010564 regulation of cell cycle process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010639 negative regulation of organelle organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010948 negative regulation of cell cycle process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016157 sucrose synthase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016849 phosphorus-oxygen lyase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0018130 heterocycle biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0019438 aromatic compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0022402 cell cycle process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0031577 spindle checkpoint signaling IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032774 RNA biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0032993 protein-DNA complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033043 regulation of organelle organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033044 regulation of chromosome organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033045 regulation of sister chromatid segregation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033046 negative regulation of sister chromatid segregation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033048 negative regulation of mitotic sister chromatid segregation IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0033897 ribonuclease T2 activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0034061 DNA polymerase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0035251 UDP-glucosyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0043531 ADP binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0045786 negative regulation of cell cycle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0045839 negative regulation of mitotic nuclear division IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0045841 negative regulation of mitotic metaphase/anaphase transition IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0045930 negative regulation of mitotic cell cycle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0048544 recognition of pollen IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051128 regulation of cellular component organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051129 negative regulation of cellular component organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051726 regulation of cell cycle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051783 regulation of nuclear division IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051784 negative regulation of nuclear division IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051983 regulation of chromosome segregation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051985 negative regulation of chromosome segregation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071173 spindle assembly checkpoint signaling IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071174 mitotic spindle checkpoint signaling IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901987 regulation of cell cycle phase transition IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901988 negative regulation of cell cycle phase transition IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901991 negative regulation of mitotic cell cycle phase transition IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1903047 mitotic cell cycle process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1905818 regulation of chromosome separation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1905819 negative regulation of chromosome separation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:2000816 negative regulation of mitotic sister chromatid separation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:2001251 negative regulation of chromosome organization IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 381 957
No external refs found!