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  5. Spov3_chr6.00180

Spov3_chr6.00180 (SMC1, ATSMC1, TTN8)


Aliases : SMC1, ATSMC1, TTN8

Description : component *(SMC1/TTN8) of cohesin regulator complex


Gene families : OG0004972 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004972_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr6.00180
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_110


Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000075 cell cycle checkpoint signaling IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003677 DNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003684 damaged DNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003824 catalytic activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003887 DNA-directed DNA polymerase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004721 phosphoprotein phosphatase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004842 ubiquitin-protein transferase activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0005685 U1 snRNP IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006351 DNA-templated transcription IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006366 transcription by RNA polymerase II IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006376 mRNA splice site recognition IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0007088 regulation of mitotic nuclear division IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0007093 mitotic cell cycle checkpoint signaling IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0007094 mitotic spindle assembly checkpoint signaling IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0007346 regulation of mitotic cell cycle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008094 ATP-dependent activity, acting on DNA IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010564 regulation of cell cycle process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010639 negative regulation of organelle organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010948 negative regulation of cell cycle process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016311 dephosphorylation IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016740 transferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016746 acyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016755 aminoacyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016779 nucleotidyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0019787 ubiquitin-like protein transferase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0022402 cell cycle process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0022618 protein-RNA complex assembly IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0030832 regulation of actin filament length IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0030833 regulation of actin filament polymerization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0031047 regulatory ncRNA-mediated gene silencing IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0031267 small GTPase binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0031577 spindle checkpoint signaling IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032271 regulation of protein polymerization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032446 protein modification by small protein conjugation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032535 regulation of cellular component size IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032774 RNA biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032956 regulation of actin cytoskeleton organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032970 regulation of actin filament-based process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033043 regulation of organelle organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033044 regulation of chromosome organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033045 regulation of sister chromatid segregation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033046 negative regulation of sister chromatid segregation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033048 negative regulation of mitotic sister chromatid segregation IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0034061 DNA polymerase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043254 regulation of protein-containing complex assembly IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0043531 ADP binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043687 post-translational protein modification IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0044087 regulation of cellular component biogenesis IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0045786 negative regulation of cell cycle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0045839 negative regulation of mitotic nuclear division IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0045841 negative regulation of mitotic metaphase/anaphase transition IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0045930 negative regulation of mitotic cell cycle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0048519 negative regulation of biological process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0048523 negative regulation of cellular process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0050789 regulation of biological process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0050794 regulation of cellular process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0051020 GTPase binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051128 regulation of cellular component organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051129 negative regulation of cellular component organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051493 regulation of cytoskeleton organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051726 regulation of cell cycle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051783 regulation of nuclear division IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051784 negative regulation of nuclear division IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051983 regulation of chromosome segregation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051985 negative regulation of chromosome segregation IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0061659 ubiquitin-like protein ligase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0061666 UFM1 ligase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0065007 biological regulation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0065008 regulation of biological quality IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0070647 protein modification by small protein conjugation or removal IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071173 spindle assembly checkpoint signaling IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071174 mitotic spindle checkpoint signaling IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0071568 UFM1 transferase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071569 protein ufmylation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071826 protein-RNA complex organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0090066 regulation of anatomical structure size IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0097525 spliceosomal snRNP complex IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0098797 plasma membrane protein complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0110053 regulation of actin filament organization IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0120114 Sm-like protein family complex IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140097 catalytic activity, acting on DNA IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901987 regulation of cell cycle phase transition IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901988 negative regulation of cell cycle phase transition IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901991 negative regulation of mitotic cell cycle phase transition IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1902903 regulation of supramolecular fiber organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1903047 mitotic cell cycle process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1905818 regulation of chromosome separation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1905819 negative regulation of chromosome separation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:2000816 negative regulation of mitotic sister chromatid separation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:2001251 negative regulation of chromosome organization IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001251 CRAL-TRIO_dom 1418 1580
IPR010935 SMC_hinge 516 628
IPR003395 RecF/RecN/SMC_N 10 1193
No external refs found!