1. Home
  2. Species
  3. Spinacia oleracea
  4. Sequence
  5. Spov3_chr5.02376

Spov3_chr5.02376


Description : not classified


Gene families : OG0000049 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr5.02376
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_102

Target Alias Description ECC score Gene Family Method Actions
Spov3_chr4.00270 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03859 TRM29, ACI1 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003824 catalytic activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004000 adenosine deaminase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004525 ribonuclease III activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004556 alpha-amylase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0005975 carbohydrate metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0005996 monosaccharide metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006006 glucose metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006325 chromatin organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006382 adenosine to inosine editing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006400 tRNA modification IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008033 tRNA processing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008150 biological_process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008152 metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008168 methyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008170 N-methyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008175 tRNA methyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010257 NADH dehydrogenase complex assembly IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010275 NAD(P)H dehydrogenase complex assembly IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016160 amylase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016553 base conversion or substitution editing IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016787 hydrolase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016853 isomerase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016866 intramolecular transferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0019239 deaminase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0019318 hexose metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0044238 primary metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046855 obsolete inositol phosphate dephosphorylation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071704 organic substance metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0140673 transcription elongation-coupled chromatin remodeling IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:2001070 starch binding IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_rpt 326 353
IPR002885 Pentatricopeptide_rpt 527 552
IPR002885 Pentatricopeptide_rpt 355 384
IPR002885 Pentatricopeptide_rpt 253 283
IPR006912 Harbinger_derived_prot 2 102
IPR032867 DYW_dom 669 761
IPR002885 Pentatricopeptide_rpt 453 500
IPR002885 Pentatricopeptide_rpt 148 195
IPR046848 E_motif 570 632
No external refs found!