Bra001090 (MS2, ATMS2)


Aliases : MS2, ATMS2

Description : methyl-tetrahydrofolate-dependent methionine synthase. EC_2.1 transferase transferring one-carbon group


Gene families : OG0000631 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000631_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra001090
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_175

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_2_104041.1 ATCIMS, METS1,... EC_2.1 transferase transferring one-carbon group.... 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_6_32121.1 ATCIMS, METS1,... EC_2.1 transferase transferring one-carbon group.... 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.03909 ATCIMS, METS1,... EC_2.1 transferase transferring one-carbon group.... 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0008652 amino acid biosynthetic process IEA Interproscan
BP GO:0009086 methionine biosynthetic process IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0001932 regulation of protein phosphorylation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004427 inorganic diphosphate phosphatase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004779 sulfate adenylyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005506 iron ion binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005875 microtubule associated complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0005975 carbohydrate metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008194 UDP-glycosyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016491 oxidoreductase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016757 glycosyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016779 nucleotidyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016840 carbon-nitrogen lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016843 amine-lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016844 strictosidine synthase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019220 regulation of phosphate metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019900 kinase binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019901 protein kinase binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0030286 dynein complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031399 regulation of protein modification process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042325 regulation of phosphorylation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043549 regulation of kinase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0045859 regulation of protein kinase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051174 regulation of phosphorus metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051246 regulation of protein metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051338 regulation of transferase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051726 regulation of cell cycle IEP Brassica rapa GO terms from Neighborhoods
MF GO:0070566 adenylyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002629 Met_Synth_C/arc 456 779
IPR013215 Cbl-indep_Met_Synth_N 3 316
No external refs found!