Spov3_chr5.00797 (SETH5, VPS8)

Aliases : SETH5, VPS8

Description : CORVET-specific component *(VPS8) of HOPS/CORVET membrane tethering complexes

Gene families : OG0071077 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr5.00797
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_162

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0000166	nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003674	molecular_function	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003712	transcription coregulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004175	endopeptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004198	calcium-dependent cysteine-type endopeptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005488	binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006366	transcription by RNA polymerase II	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016311	dephosphorylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016485	protein processing	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0016592	mediator complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016746	acyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016755	aminoacyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0034450	ubiquitin-ubiquitin ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0036260	RNA capping	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0042393	histone binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051726	regulation of cell cycle	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0070568	guanylyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071586	CAAX-box protein processing	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140110	transcription regulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140359	ABC-type transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000547	Clathrin_H-chain/VPS_repeat	1502	1566
IPR025941	Vps8_central_dom	1001	1186

External Links

No external refs found!

Spov3_chr5.00797 (SETH5, VPS8)

Expression Profile

Co-expression Networks

Functional Annotation