Spov3_chr5.00616 (ATM1)

Aliases : ATM1

Description : not classified

Gene families : OG0020303 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr5.00616
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_122

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003774	cytoskeletal motor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0016459	myosin complex	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003824	catalytic activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008173	RNA methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016579	protein deubiquitination	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043022	ribosome binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043038	amino acid activation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043039	tRNA aminoacylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043687	post-translational protein modification	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0070646	protein modification by small protein removal	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0101005	deubiquitinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001609	Myosin_head_motor_dom	903	987

External Links

No external refs found!

Spov3_chr5.00616 (ATM1)

Expression Profile

Co-expression Networks

Functional Annotation