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  5. Spov3_chr4.03388

Spov3_chr4.03388 (ELONGATION FACTOR-TU FAMILY)


Aliases : ELONGATION FACTOR-TU FAMILY

Description : aminoacyl-tRNA binding factor *(eEF1A))


Gene families : OG0000112 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr4.03388
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Bra018669 ELONGATION... aminoacyl-tRNA binding factor *(eEF1A)) 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra031602 ELONGATION... aminoacyl-tRNA binding factor *(eEF1A)) 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_2_97861.1 EF1alpha aminoacyl-tRNA binding factor *(eEF1A)) 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003684 damaged DNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004843 cysteine-type deubiquitinase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005509 calcium ion binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005515 protein binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006099 tricarboxylic acid cycle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006289 nucleotide-excision repair IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006457 protein folding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006508 proteolysis IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008152 metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010215 cellulose microfibril organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010498 proteasomal protein catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016579 protein deubiquitination IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0019538 protein metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0019783 ubiquitin-like protein peptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030117 membrane coat IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030118 clathrin coat IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030120 vesicle coat IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030125 clathrin vesicle coat IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030132 clathrin coat of coated pit IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0030163 protein catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0030198 extracellular matrix organization IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0030246 carbohydrate binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0030247 polysaccharide binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0030554 adenyl nucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0031072 heat shock protein binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0032977 membrane insertase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0042802 identical protein binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0042803 protein homodimerization activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043062 extracellular structure organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0044238 primary metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0051082 unfolded protein binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0051087 protein-folding chaperone binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0060590 ATPase regulator activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0070646 protein modification by small protein removal IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071704 organic substance metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0098797 plasma membrane protein complex IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0101005 deubiquitinase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140104 molecular carrier activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140597 protein carrier chaperone IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901564 organonitrogen compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901565 organonitrogen compound catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR004160 Transl_elong_EFTu/EF1A_C 321 429
IPR000795 T_Tr_GTP-bd_dom 7 221
IPR004161 EFTu-like_2 248 313
No external refs found!