Spov3_chr4.02807 (NRPA1)

Aliases : NRPA1

Description : component *(NRPA1) of RNA polymerase I complex

Gene families : OG0020030 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr4.02807
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_154

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003724	RNA helicase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003924	GTPase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005575	cellular_component	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006334	nucleosome assembly	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006338	chromatin remodeling	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008097	5S rRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008134	transcription factor binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0009982	pseudouridine synthase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0010181	FMN binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016887	ATP hydrolysis activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0030490	maturation of SSU-rRNA	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030684	preribosome	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0031072	heat shock protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0032040	small-subunit processome	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034728	nucleosome organization	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043228	non-membrane-bounded organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044085	cellular component biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0065004	protein-DNA complex assembly	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0110165	cellular anatomical entity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007081	RNA_pol_Rpb1_5	1015	1618
IPR007083	RNA_pol_Rpb1_4	922	1008
IPR007066	RNA_pol_Rpb1_3	609	859
IPR000722	RNA_pol_asu	434	605
IPR007080	RNA_pol_Rpb1_1	28	431

External Links

No external refs found!

Spov3_chr4.02807 (NRPA1)

Expression Profile

Co-expression Networks

Functional Annotation