Bra010465 (AGL72)

Aliases : AGL72

Description : MADS/AGL-type transcription factor

Gene families : OG0002029 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002029_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra010465
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_57

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004146	dihydrofolate reductase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008061	chitin binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008170	N-methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008649	rRNA methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0009055	electron transfer activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009606	tropism	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0009916	alternative oxidase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010274	hydrotropism	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016436	rRNA (uridine) methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016597	amino acid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030170	pyridoxal phosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031167	rRNA methylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031406	carboxylic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043177	organic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046653	tetrahydrofolate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046654	tetrahydrofolate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0070042	rRNA (uridine-N3-)-methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0070279	vitamin B6 binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0070475	rRNA base methylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	59	105

External Links

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Bra010465 (AGL72)

Expression Profile

Co-expression Networks

Functional Annotation