Spov3_chr4.00974 (DOT2, MDF)

Aliases : DOT2, MDF

Description : not classified

Gene families : OG0009892 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr4.00974
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_108

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000350	generation of catalytic spliceosome for second transesterification step	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003674	molecular_function	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003724	RNA helicase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003924	GTPase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005488	binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005681	spliceosomal complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0022618	protein-RNA complex assembly	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0031072	heat shock protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032774	RNA biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0034511	U3 snoRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0051082	unfolded protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071826	protein-RNA complex organization	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR005011	SNU66/SART1	319	865

External Links

No external refs found!

Spov3_chr4.00974 (DOT2, MDF)

Expression Profile

Co-expression Networks

Functional Annotation