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Heatmap: Cluster_264 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000100 (GBPL2)
 0.39 0.62 0.9 0.44 0.41 0.21 -0.18 -0.3 -0.17 -0.26 -0.28 -0.31 -0.14 0.2 0.04 0.0 -0.05 -0.25 -0.25 -0.37 -0.5 -0.33 0.36 0.0 -0.26 -0.53 0.09 -0.27 -0.07 -0.17 -0.27
Bra000236 (ABCA1)
 1.98 1.8 1.15 0.53 0.21 0.34 -0.9 -1.34 -0.67 -0.63 -0.57 -0.78 -0.88 -0.12 -0.05 -0.61 -0.74 -0.88 -0.53 -0.57 -0.65 -0.53 0.17 -0.89 -0.52 -0.55 -0.44 -0.25 0.04 -0.37 -0.58
Bra000813 (WIP2)
 2.88 2.75 3.23 1.95 -1.93 -5.69 -7.9 -4.14 -3.39 -4.55 -6.1 -2.87 -5.02 -5.58 -7.32 -6.35 -7.62 -7.27 -4.94 -3.01 -4.46 -4.37 -0.41 -7.54 -5.45 -2.77 -3.06 -3.68 -4.77 0.38 -2.47
Bra002566 (TRP1)
 0.77 1.06 1.11 1.2 0.24 0.4 -0.6 -0.76 -0.16 -0.39 -0.17 -0.25 -0.83 -0.37 0.37 -0.2 -0.1 -0.88 -0.51 -0.45 -0.52 -0.33 0.37 -0.57 -0.54 0.05 -0.44 -0.33 -0.12 -0.34 -0.35
Bra002856 (DDR1)
 2.09 2.24 2.08 1.04 -0.3 -0.07 -1.61 -1.29 -0.1 -1.39 -0.32 -0.78 -2.23 -0.75 -0.88 -2.07 -1.92 -0.61 -0.75 -1.87 -1.81 -2.21 0.78 -1.44 -0.47 -1.43 -1.22 -1.09 0.11 -0.1 -0.88
1.91 1.74 1.02 1.35 0.67 0.28 -1.84 -1.08 -0.94 -0.8 -1.23 -0.99 -0.74 0.04 -1.04 -0.63 -0.58 -0.69 0.09 -1.4 -0.5 -0.48 -1.59 -0.51 -1.06 0.63 -0.73 -0.07 -0.41 -0.28 -0.69
Bra003883 (HRE1)
 1.8 2.75 1.97 1.48 -0.23 0.02 -1.61 -1.99 -0.99 -1.95 -1.09 -0.13 -0.85 -0.64 -1.57 -1.31 -1.55 -2.33 -2.3 -1.64 -1.65 -1.08 1.16 -1.53 -1.49 -0.52 -1.78 -0.23 -1.22 -1.17 -4.47
Bra005207 (PDR5)
 0.43 1.03 1.89 0.57 0.38 0.02 -1.01 -1.52 -0.89 -0.14 -0.59 -0.63 -0.94 1.06 0.79 -0.2 -0.2 -1.1 -0.11 -0.48 -0.46 -0.43 -0.1 -0.66 -0.59 -0.37 -0.57 -0.81 -0.26 -0.23 -0.18
Bra008936 (KEA6)
 0.81 0.94 0.63 0.38 -0.1 -0.08 -0.27 -0.09 -0.44 -0.03 -0.07 -0.41 -0.25 0.04 -0.05 -0.24 -0.37 -0.0 -0.29 -0.13 -0.52 -0.09 -0.15 0.04 -0.08 0.17 -0.1 -0.02 0.03 -0.17 -0.38
Bra009303 (PATROL1)
 1.25 1.0 0.79 0.83 0.11 -0.2 -0.44 -0.3 -0.09 -0.2 -0.2 -0.14 -0.31 0.12 0.08 -0.54 -0.45 -0.45 -0.25 -0.62 -0.51 -0.56 -0.57 -0.39 -0.28 -0.02 -0.28 0.08 0.05 -0.03 -0.13
1.25 1.14 0.52 0.3 -1.48 -0.52 -1.01 -0.85 0.12 -0.19 0.14 -0.17 0.39 -0.35 -0.62 -1.03 -0.79 -0.45 -0.12 -0.48 -0.43 -0.37 -0.15 -0.1 0.06 0.22 0.44 -0.61 0.36 0.23 0.58
1.77 2.11 1.82 1.11 1.49 0.25 -2.46 -1.96 -1.41 -0.73 -1.15 -1.01 -2.31 -0.17 0.0 -1.14 -1.37 -1.56 -0.63 -0.96 -1.17 -0.94 -1.08 -1.64 -1.58 -2.16 -1.38 -0.51 -0.57 0.58 0.26
2.65 1.61 0.74 -0.34 -0.21 -1.32 -0.85 -0.17 -0.83 -1.04 -0.14 0.09 0.2 -2.55 -2.0 -2.45 -1.6 -1.49 -2.36 -1.36 -1.05 -1.36 -0.28 -0.79 -0.03 -0.04 -0.6 0.48 1.34 -0.34 -0.21
1.13 1.19 0.85 0.54 0.42 0.2 -0.52 -0.19 -0.25 -0.05 -0.07 -0.11 -0.26 0.1 0.13 -0.28 -0.2 0.05 -0.29 -0.42 -0.32 -0.13 -0.3 -0.82 -0.62 -0.5 -0.69 -0.33 -0.35 -0.22 -0.43
Bra011688 (AUXILIN-LIKE4)
 0.77 1.2 1.44 0.81 0.49 0.38 -1.01 -0.99 -0.57 -0.28 -0.2 -0.64 -0.37 -0.07 0.24 -0.31 -0.52 -0.11 -0.43 -0.43 -0.73 -0.24 0.71 -0.3 -0.39 -0.66 -0.62 -0.41 -0.24 -0.34 -0.59
1.95 2.72 2.24 1.5 1.36 1.16 -1.38 -1.61 -1.19 -1.07 -1.09 -1.99 -1.71 -0.02 0.54 -0.97 -0.22 -1.06 -2.51 -2.21 -2.04 -0.68 - - - - - - - - -
Bra011772 (LBD39)
 1.66 2.82 2.73 2.01 -6.84 -6.4 -3.47 -0.74 -4.27 -1.72 -2.69 -2.1 -1.03 - -4.94 -3.21 -1.95 -0.03 -3.48 -2.53 -3.59 -1.31 -0.93 -3.39 -2.68 -0.66 -1.72 -5.67 -4.43 1.63 0.21
Bra012183 (RL5)
 2.35 2.99 2.16 2.09 -1.76 -1.01 -1.05 -1.12 -1.44 -1.32 -1.41 -1.09 -3.05 -3.4 -2.62 -2.37 -1.75 -5.92 -3.36 -1.79 -1.13 -1.31 -5.33 -1.94 -1.15 -0.2 -1.06 -1.2 -0.57 -1.48 -2.5
Bra012256 (ESC)
 2.37 3.26 2.92 1.88 -3.16 -5.85 -2.85 -4.99 -4.02 - -2.57 -5.96 -1.4 -4.74 -5.55 -2.28 -2.88 -0.51 - -2.8 -1.0 -2.11 -0.46 -3.4 -1.99 -1.51 -3.55 -3.58 -2.38 -2.53 -2.54
Bra012472 (PML4)
 2.26 2.4 1.91 1.41 -0.08 1.0 -2.77 -2.76 -2.41 -2.41 -1.08 -1.57 -1.66 -1.49 -0.5 -1.23 -2.36 -2.64 -1.12 -2.74 -0.1 -1.36 -0.08 -1.16 -0.81 -0.8 -0.76 -0.2 0.3 -0.79 -2.29
1.41 1.62 1.07 0.82 -0.03 0.56 -0.36 -0.84 -0.68 -0.53 -0.47 -0.72 -0.63 -0.09 -0.04 -0.73 -0.84 -0.87 -0.56 -0.03 -0.11 -0.36 -2.19 -0.25 -0.44 0.78 -0.39 -0.62 -0.05 -0.35 -0.56
1.38 2.64 2.12 1.52 -0.37 0.15 -2.22 -2.11 -1.44 -0.34 -1.59 -0.14 -2.36 -1.19 -0.79 -1.03 -0.69 -2.42 -2.02 -2.19 -1.51 0.05 -0.38 -0.58 -0.68 -1.07 -0.56 -0.8 -0.45 -0.29 -0.87
Bra014461 (CYP76C4)
 1.97 2.34 2.46 2.17 0.3 0.27 -3.27 -3.6 -3.05 -0.36 -2.41 -0.82 -1.99 -0.54 0.41 -2.76 -2.66 0.59 -1.83 -2.7 -4.25 0.13 0.88 -3.94 -4.61 - -7.05 -3.93 -4.17 -6.9 -
1.82 1.26 1.46 0.38 1.03 0.18 -1.85 -1.84 -0.2 -0.9 -0.63 -0.3 -1.7 -0.61 -0.14 -0.83 -1.33 0.15 -0.09 -0.64 -1.32 -0.99 -1.95 -0.77 -0.82 -0.16 -0.62 -0.15 -0.27 0.78 0.67
1.15 1.21 0.88 0.61 0.83 0.25 -0.63 -0.59 -0.46 -0.27 -0.67 -0.55 -0.59 0.12 0.21 -0.58 -0.77 -0.31 -0.28 -0.4 -0.9 -0.4 0.41 -0.61 -0.66 -0.13 -0.78 0.28 -0.0 -0.04 -0.29
Bra016320 (ARL1)
 2.44 2.47 2.25 1.75 0.22 -0.1 -0.85 -0.38 -0.51 -0.06 -0.07 -0.43 -1.21 -0.69 -1.47 -1.02 -0.95 -0.61 -1.23 -0.62 -3.07 -0.25 - - - - - - - - -
0.51 1.1 1.33 0.58 0.32 0.12 -0.69 -0.28 -0.41 -0.64 -0.37 -0.43 -0.28 0.22 0.49 -0.37 -0.86 0.06 -0.56 -0.44 -0.37 -0.19 -0.19 -0.13 -0.35 -0.04 -0.38 -0.32 -0.06 -0.29 0.01
Bra019252 (ATL82)
 1.08 2.63 1.88 1.09 0.74 0.05 -2.26 -0.94 -1.88 -1.41 -0.99 -0.75 -1.68 -1.25 -0.06 -2.11 -1.13 -0.21 -1.16 -0.98 -1.46 -1.31 -0.76 -2.52 -0.82 1.03 -1.3 -1.1 -0.12 -0.33 -0.36
Bra020013 (HY8)
 2.27 2.58 1.57 0.96 -0.3 -0.46 -1.74 -1.56 -1.01 -0.91 -0.92 -0.9 -0.89 -0.39 -0.59 -1.23 -1.2 -0.52 -1.06 -1.04 -1.62 -1.39 -1.06 -1.06 -0.88 -0.54 -0.85 -0.24 -0.3 -0.39 -0.58
2.77 2.35 1.96 2.05 1.15 0.54 -1.77 -0.77 -2.43 -1.57 -0.36 -1.6 -2.74 -3.1 -2.33 -3.35 -2.93 -0.65 -1.64 -2.58 -0.51 -1.38 -2.93 -5.08 -3.85 -0.59 -3.67 -1.01 -1.89 -2.52 -4.67
Bra020895 (SPHK2)
 0.31 0.89 1.45 0.1 0.55 0.39 -0.46 -0.89 -0.03 -0.46 -0.56 -0.24 -1.0 0.55 0.55 -0.09 -0.2 -0.67 -0.2 -0.59 -0.4 -0.33 0.5 -0.4 -0.46 -0.54 -0.61 -0.43 0.01 0.09 -0.27
Bra022468 (STP4)
 1.8 2.92 1.96 2.29 0.87 -1.01 -2.93 -2.7 -1.76 -0.99 -1.68 -1.13 -4.19 -2.16 -1.45 -1.71 -2.33 -1.7 -2.27 -2.52 -2.56 -2.98 -0.75 -2.79 -3.11 0.6 -2.45 -1.19 -1.16 0.24 -2.04
Bra024562 (AST91)
 1.43 1.48 1.28 0.25 0.03 -0.89 -1.43 -1.67 -0.44 -0.4 -0.22 -0.73 -0.61 -1.41 -1.75 -0.87 -1.25 -1.42 -0.27 0.29 0.21 -0.18 0.34 -0.14 0.0 -0.71 0.07 0.29 0.58 0.33 0.18
Bra025083 (CYP707A3)
 2.04 2.9 2.54 1.91 - -0.33 0.59 - - - - -0.55 -0.71 - - - - - -2.15 - -1.03 - 1.3 - - -1.56 - - 0.28 0.6 -
Bra026044 (SAUR41)
 1.55 2.57 2.03 0.48 0.16 0.11 -2.94 -1.38 -0.9 -2.38 -2.01 -2.2 -1.74 0.51 1.21 -2.71 -1.67 0.75 -0.01 -2.25 -1.55 -1.36 -2.28 -1.09 -2.18 -0.75 -0.79 -0.45 0.03 -1.23 -1.3
3.13 2.8 1.72 -0.02 -1.09 -0.11 -2.12 - -1.95 - - - -1.87 - - - - - - - -2.01 -0.48 1.13 -0.16 - -1.08 -1.07 -0.18 0.45 0.7 -
1.3 2.42 1.58 1.41 1.43 -0.84 0.68 -0.79 -1.33 -1.92 -0.27 - -3.52 - -1.29 -1.66 -0.96 -3.43 -2.0 - - -2.04 1.13 -1.17 -0.31 0.39 -1.74 -1.22 0.07 0.07 0.15
Bra027405 (CYP90D1)
 1.41 2.21 2.02 1.12 0.22 0.48 -1.02 -1.26 -2.22 -0.84 -0.91 -0.61 -1.01 -0.66 -0.16 -1.07 -0.25 -1.01 -0.93 -1.06 -0.47 -0.56 -2.01 -1.19 -0.41 -0.74 -0.93 -0.47 -0.85 0.11 -0.18
1.32 2.44 1.75 1.35 0.09 0.41 -1.57 -1.23 -0.85 -1.15 -0.91 -1.1 -0.53 0.04 0.05 -0.8 -0.48 -0.29 -0.81 -0.6 -1.57 -1.14 -1.61 -1.33 -0.97 0.11 -0.99 -1.46 -0.56 -0.6 -0.8
Bra029666 (COL9)
 1.8 1.96 1.69 1.72 1.18 0.47 -1.58 -2.62 -1.56 -0.23 -0.9 -1.25 -1.07 -0.64 0.13 -0.31 -0.4 -1.08 -0.95 -0.86 -0.73 -0.31 -0.12 -1.95 -1.3 -1.13 -1.32 -1.32 -1.44 -1.28 -1.15
Bra030238 (HB6)
 1.31 1.33 2.01 1.0 1.02 -0.01 -1.18 -0.89 0.03 -0.76 -0.6 -0.55 -1.39 0.22 0.2 -1.15 -1.06 -1.18 -0.67 -0.39 -0.89 -0.44 -0.55 -0.96 -0.97 -0.47 -1.03 -0.53 -0.22 0.25 -0.64
0.26 3.56 2.67 1.28 0.34 -0.28 -4.42 -1.96 -2.81 -3.58 -1.62 -1.19 -2.18 -0.06 1.34 -3.87 -2.26 0.26 -2.25 -3.23 -2.92 -2.57 - - - - - - - - -
1.53 1.83 1.76 0.97 1.38 0.27 -2.23 -1.67 -0.27 -0.62 -0.64 -0.83 -2.7 -0.22 0.43 -1.85 -1.58 -0.47 -1.06 -0.57 -1.16 -0.67 0.63 -1.41 -1.35 -1.51 -1.38 -0.96 -0.03 0.06 -0.52
Bra031977 (CAT4)
 1.79 1.18 2.0 1.09 1.63 0.17 -2.03 -1.35 -0.6 -1.19 -0.98 -0.94 -0.58 -0.08 0.14 -1.56 -1.52 -2.02 -1.57 -1.38 -1.2 -1.52 0.7 -1.14 -1.75 -1.77 -1.34 -0.15 -0.22 -0.09 0.32
2.02 2.55 2.62 1.44 0.51 -1.09 -3.91 -2.91 -1.0 -1.24 -1.71 -1.58 -2.56 -2.25 -0.29 -1.71 -1.82 -1.09 -1.75 -1.95 -2.57 -1.92 -1.35 -3.28 -2.97 -0.88 -2.36 -2.34 -1.59 0.89 0.69
Bra034156 (AZG1)
 1.76 2.14 1.89 1.14 2.1 0.49 -2.98 -3.83 -0.71 -2.0 -2.12 -0.96 -3.09 0.06 0.57 -1.6 -2.22 -2.86 -1.75 -2.71 -3.25 -2.1 0.11 -1.6 -2.17 -0.84 -2.13 -0.54 -0.08 0.48 -2.16
Bra034713 (NAC1L)
 2.37 2.85 2.55 0.32 0.62 0.39 -4.42 -4.31 -1.53 -1.96 -0.35 -1.23 -2.87 -1.77 -0.03 -2.47 -3.53 -0.91 -2.31 -1.41 -2.08 -0.55 -1.23 -2.23 -2.56 -3.37 -1.97 -1.11 -0.84 -0.39 -3.14
Bra035554 (VTC5)
 0.97 1.99 1.96 0.91 1.22 0.79 -0.6 -0.67 -1.13 -0.96 -1.6 -1.1 -0.84 -0.69 -0.33 -0.05 -1.99 0.48 -0.73 -0.84 -1.75 -0.53 0.87 -1.12 -0.97 -2.33 -1.37 -1.54 -1.16 -0.81 -0.56
1.55 1.56 0.93 1.13 -1.88 -0.67 -1.02 -0.65 -0.46 -0.42 -0.11 -0.23 -0.1 -0.53 -0.71 -1.07 -0.43 -0.57 -0.38 -0.24 -0.4 -0.53 -0.63 -0.2 -0.08 0.17 -0.14 -0.58 0.15 0.01 0.33
1.15 1.1 1.27 1.31 0.69 -0.03 -1.43 -0.99 -0.32 -0.32 -0.31 -0.19 -0.53 -0.28 -0.15 -0.51 -0.55 -0.02 -0.28 -0.44 -0.39 -0.72 0.47 -0.69 -0.74 -0.2 -0.65 -0.23 -0.5 -0.17 -0.52
Bra039006 (ACO1)
 2.49 2.23 1.2 0.83 -2.35 -2.42 -0.76 0.44 -0.7 0.0 -0.72 -1.02 -1.22 -1.21 -1.89 -1.01 -1.38 0.13 -0.74 0.2 -0.09 -1.44 0.01 -0.75 -1.36 -0.47 -0.92 -1.3 -0.96 -0.25 -1.18

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.