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Heatmap: Cluster_264 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

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(Showing raw values)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000100 (GBPL2)
 5.74 6.74 8.2 5.95 5.85 5.09 3.86 3.56 3.91 3.67 3.62 3.54 3.98 5.02 4.51 4.4 4.25 3.69 3.69 3.4 3.11 3.49 5.64 4.39 3.65 3.03 4.65 3.63 4.16 3.91 3.63
Bra000236 (ABCA1)
 40.28 35.6 22.76 14.74 11.86 12.97 5.47 4.05 6.43 6.62 6.86 5.95 5.55 9.4 9.88 6.71 6.11 5.56 7.09 6.86 6.51 7.05 11.49 5.53 7.14 6.99 7.53 8.58 10.53 7.91 6.86
Bra000813 (WIP2)
 213.13 194.44 271.65 111.59 7.6 0.56 0.12 1.64 2.76 1.23 0.42 3.94 0.89 0.6 0.18 0.35 0.15 0.19 0.94 3.59 1.32 1.39 21.79 0.15 0.66 4.24 3.46 2.25 1.06 37.51 5.19
Bra002566 (TRP1)
 21.38 26.18 27.12 28.84 14.82 16.56 8.29 7.41 11.24 9.61 11.2 10.58 7.06 9.69 16.23 10.93 11.74 6.82 8.83 9.18 8.74 9.99 16.22 8.43 8.62 12.97 9.27 10.01 11.6 9.93 9.85
Bra002856 (DDR1)
 8.35 9.23 8.27 4.02 1.59 1.87 0.64 0.8 1.83 0.75 1.57 1.14 0.42 1.17 1.07 0.47 0.52 1.28 1.16 0.53 0.56 0.42 3.37 0.72 1.42 0.72 0.84 0.92 2.1 1.82 1.06
2.32 2.06 1.25 1.58 0.98 0.75 0.17 0.29 0.32 0.35 0.26 0.31 0.37 0.64 0.3 0.4 0.41 0.38 0.66 0.23 0.44 0.44 0.2 0.43 0.3 0.96 0.37 0.59 0.46 0.51 0.38
Bra003883 (HRE1)
 7.01 13.56 7.9 5.64 1.72 2.05 0.66 0.51 1.01 0.52 0.94 1.85 1.11 1.29 0.68 0.81 0.69 0.4 0.41 0.65 0.64 0.95 4.5 0.7 0.72 1.4 0.59 1.72 0.87 0.89 0.09
Bra005207 (PDR5)
 5.4 8.17 14.82 5.95 5.2 4.05 1.99 1.39 2.16 3.64 2.66 2.59 2.08 8.35 6.92 3.48 3.48 1.86 3.71 2.86 2.9 2.97 3.72 2.54 2.66 3.1 2.7 2.29 3.34 3.41 3.54
Bra008936 (KEA6)
 7.89 8.65 6.96 5.85 4.2 4.25 3.73 4.23 3.31 4.41 4.27 3.37 3.78 4.63 4.33 3.81 3.49 4.49 3.67 4.12 3.14 4.22 4.05 4.61 4.26 5.06 4.18 4.44 4.6 4.01 3.45
Bra009303 (PATROL1)
 36.78 31.01 26.71 27.45 16.68 13.46 11.36 12.57 14.56 13.41 13.47 14.06 12.49 16.81 16.28 10.59 11.33 11.33 12.96 10.03 10.82 10.49 10.4 11.77 12.71 15.19 12.72 16.31 15.96 15.12 14.15
117.39 108.71 70.63 60.64 17.68 34.3 24.4 27.28 53.44 43.29 54.49 43.76 64.62 38.6 32.17 24.08 28.47 36.04 45.31 35.39 36.52 38.03 44.36 46.04 51.33 57.43 66.89 32.26 63.22 57.9 73.63
38.7 49.12 40.12 24.55 31.83 13.52 2.06 2.92 4.27 6.82 5.11 5.64 2.28 10.08 11.38 5.17 4.38 3.85 7.31 5.82 5.03 5.91 5.36 3.64 3.79 2.53 4.37 7.97 7.64 16.96 13.56
11.59 5.65 3.09 1.46 1.6 0.74 1.02 1.64 1.04 0.9 1.68 1.97 2.13 0.32 0.46 0.34 0.61 0.66 0.36 0.72 0.89 0.72 1.52 1.07 1.82 1.8 1.22 2.58 4.68 1.46 1.6
36.67 38.11 30.12 24.32 22.35 19.3 11.68 14.71 14.12 16.15 15.99 15.52 13.96 17.96 18.3 13.81 14.53 17.32 13.71 12.53 13.42 15.25 13.62 9.5 10.89 11.85 10.41 13.34 13.1 14.34 12.4
Bra011688 (AUXILIN-LIKE4)
 8.41 11.35 13.38 8.69 6.95 6.45 2.45 2.49 3.33 4.08 4.29 3.18 3.83 4.69 5.85 3.99 3.44 4.57 3.67 3.66 2.98 4.19 8.06 4.01 3.78 3.12 3.2 3.71 4.17 3.91 3.29
104.42 178.78 127.99 76.9 69.44 60.47 10.42 8.9 11.86 12.94 12.72 6.83 8.29 26.65 39.39 13.8 23.24 13.02 4.77 5.87 6.58 16.88 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra011772 (LBD39)
 35.75 80.1 74.98 45.77 0.1 0.13 1.03 6.8 0.59 3.44 1.75 2.64 5.55 0.0 0.37 1.23 2.93 11.07 1.02 1.95 0.94 4.58 5.94 1.08 1.77 7.16 3.43 0.22 0.52 35.13 13.07
Bra012183 (RL5)
 192.67 299.49 169.01 160.13 11.16 18.66 18.2 17.32 13.91 15.1 14.14 17.72 4.55 3.58 6.13 7.3 11.21 0.62 3.67 10.93 17.27 15.19 0.94 9.83 17.03 32.89 18.11 16.37 25.41 13.54 6.65
Bra012256 (ESC)
 3.39 6.31 4.96 2.41 0.07 0.01 0.09 0.02 0.04 0.0 0.11 0.01 0.25 0.02 0.01 0.14 0.09 0.46 0.0 0.09 0.33 0.15 0.48 0.06 0.17 0.23 0.06 0.06 0.13 0.11 0.11
Bra012472 (PML4)
 11.56 12.77 9.06 6.41 2.29 4.82 0.35 0.36 0.46 0.45 1.14 0.81 0.77 0.86 1.71 1.03 0.47 0.39 1.11 0.36 2.25 0.94 2.29 1.08 1.38 1.39 1.42 2.11 2.97 1.39 0.49
354.73 410.6 280.12 235.47 131.14 197.24 103.92 74.98 83.76 92.71 96.88 80.95 86.49 125.73 130.02 80.44 74.75 73.02 90.66 130.89 124.21 104.03 29.39 112.8 98.8 229.03 102.33 87.09 129.51 105.05 90.61
2.81 6.7 4.69 3.1 0.83 1.2 0.23 0.25 0.4 0.85 0.36 0.98 0.21 0.47 0.63 0.53 0.67 0.2 0.27 0.24 0.38 1.11 0.83 0.72 0.67 0.51 0.73 0.62 0.79 0.88 0.59
Bra014461 (CYP76C4)
 3.14 4.07 4.41 3.62 0.99 0.97 0.08 0.07 0.1 0.63 0.15 0.45 0.2 0.55 1.07 0.12 0.13 1.21 0.23 0.12 0.04 0.88 1.48 0.05 0.03 0.0 0.01 0.05 0.04 0.01 0.0
14.18 9.61 11.01 5.21 8.17 4.54 1.11 1.12 3.5 2.15 2.59 3.25 1.24 2.62 3.63 2.26 1.59 4.46 3.75 2.57 1.61 2.02 1.04 2.35 2.27 3.59 2.62 3.61 3.33 6.89 6.37
11.83 12.3 9.83 8.13 9.48 6.36 3.45 3.55 3.89 4.41 3.36 3.63 3.54 5.78 6.16 3.58 3.13 4.29 4.39 4.04 2.86 4.05 7.07 3.48 3.37 4.86 3.11 6.47 5.31 5.19 4.36
Bra016320 (ARL1)
 1.58 1.61 1.38 0.97 0.34 0.27 0.16 0.22 0.2 0.28 0.28 0.21 0.13 0.18 0.1 0.14 0.15 0.19 0.12 0.19 0.03 0.24 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
9.15 13.72 16.17 9.58 8.02 6.96 3.99 5.28 4.83 4.11 4.98 4.77 5.27 7.46 9.01 4.98 3.54 6.71 4.36 4.74 4.97 5.64 5.62 5.86 5.03 6.26 4.92 5.15 6.17 5.25 6.47
Bra019252 (ATL82)
 7.97 23.37 13.95 8.02 6.32 3.9 0.79 1.97 1.03 1.42 1.9 2.24 1.18 1.59 3.62 0.87 1.72 3.27 1.69 1.92 1.37 1.53 2.23 0.66 2.13 7.72 1.54 1.77 3.49 3.01 2.94
Bra020013 (HY8)
 53.17 66.08 32.68 21.42 8.95 8.01 3.3 3.75 5.49 5.88 5.82 5.94 5.97 8.42 7.36 4.69 4.81 7.68 5.29 5.36 3.6 4.22 5.31 5.29 6.01 7.62 6.12 9.37 8.99 8.4 7.37
72.46 53.97 41.25 43.85 23.54 15.38 3.11 6.24 1.97 3.56 8.27 3.51 1.59 1.24 2.11 1.04 1.4 6.73 3.39 1.77 7.44 4.06 1.39 0.31 0.74 7.06 0.83 5.25 2.86 1.85 0.42
Bra020895 (SPHK2)
 4.63 6.9 10.14 4.0 5.46 4.88 2.71 2.01 3.64 2.7 2.52 3.15 1.86 5.45 5.47 3.49 3.25 2.34 3.24 2.48 2.83 2.97 5.25 2.83 2.7 2.56 2.44 2.76 3.75 3.96 3.09
Bra022468 (STP4)
 17.88 38.91 19.96 25.12 9.37 2.54 0.67 0.79 1.52 2.59 1.6 2.34 0.28 1.15 1.87 1.57 1.02 1.59 1.07 0.9 0.87 0.65 3.06 0.74 0.59 7.77 0.94 2.25 2.29 6.08 1.25
Bra024562 (AST91)
 31.58 32.69 28.51 13.91 12.0 6.34 4.35 3.68 8.62 8.87 10.05 7.06 7.67 4.4 3.48 6.42 4.93 4.37 9.75 14.29 13.56 10.35 14.86 10.61 11.73 7.15 12.32 14.38 17.51 14.75 13.25
Bra025083 (CYP707A3)
 0.1 0.19 0.15 0.09 0.0 0.02 0.04 0.0 0.0 0.0 0.0 0.02 0.02 0.0 0.0 0.0 0.0 0.0 0.01 0.0 0.01 0.0 0.06 0.0 0.0 0.01 0.0 0.0 0.03 0.04 0.0
Bra026044 (SAUR41)
 23.66 48.11 33.05 11.31 9.04 8.72 1.05 3.11 4.35 1.56 2.02 1.76 2.43 11.5 18.73 1.23 2.55 13.66 8.03 1.7 2.76 3.15 1.67 3.8 1.79 4.82 4.69 5.93 8.28 3.45 3.29
0.13 0.1 0.05 0.01 0.01 0.01 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.01 0.03 0.01 0.0 0.01 0.01 0.01 0.02 0.02 0.0
0.71 1.55 0.87 0.77 0.78 0.16 0.46 0.17 0.12 0.08 0.24 0.0 0.03 0.0 0.12 0.09 0.15 0.03 0.07 0.0 0.0 0.07 0.63 0.13 0.23 0.38 0.09 0.12 0.31 0.3 0.32
Bra027405 (CYP90D1)
 1.88 3.25 2.86 1.53 0.82 0.98 0.35 0.29 0.15 0.39 0.38 0.46 0.35 0.45 0.63 0.33 0.59 0.35 0.37 0.34 0.51 0.48 0.18 0.31 0.53 0.42 0.37 0.51 0.39 0.76 0.62
3.61 7.89 4.89 3.7 1.54 1.93 0.49 0.62 0.8 0.65 0.77 0.68 1.01 1.49 1.5 0.83 1.04 1.19 0.83 0.96 0.49 0.66 0.48 0.58 0.74 1.57 0.73 0.53 0.98 0.96 0.83
Bra029666 (COL9)
 31.69 35.27 29.34 29.92 20.62 12.61 3.03 1.48 3.07 7.74 4.87 3.82 4.31 5.81 9.91 7.3 6.9 4.29 4.69 4.99 5.49 7.31 8.36 2.35 3.68 4.16 3.63 3.63 3.34 3.73 4.1
Bra030238 (HB6)
 72.62 73.84 117.79 58.59 59.64 29.05 12.92 15.85 29.89 17.36 19.38 20.03 11.2 34.06 33.66 13.25 14.03 12.96 18.46 22.41 15.82 21.63 19.97 15.07 14.93 21.11 14.4 20.3 25.24 34.77 18.8
10.07 99.22 53.26 20.41 10.64 6.91 0.39 2.15 1.19 0.7 2.73 3.66 1.85 8.06 21.16 0.57 1.75 10.02 1.76 0.89 1.11 1.41 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
71.82 88.21 84.0 48.53 64.53 29.96 5.29 7.79 20.58 16.14 15.96 13.97 3.81 21.37 33.55 6.91 8.33 17.92 11.89 16.78 11.1 15.59 38.53 9.37 9.74 8.73 9.58 12.74 24.37 25.95 17.34
Bra031977 (CAT4)
 5.24 3.43 6.08 3.25 4.71 1.71 0.37 0.6 1.0 0.67 0.77 0.79 1.01 1.44 1.67 0.51 0.53 0.38 0.51 0.58 0.66 0.53 2.47 0.69 0.45 0.45 0.6 1.37 1.31 1.43 1.9
324.92 469.86 491.97 218.02 114.18 37.62 5.32 10.65 40.24 34.02 24.5 26.92 13.6 16.88 65.88 24.55 22.77 37.74 23.86 20.82 13.55 21.16 31.43 8.24 10.21 43.51 15.64 15.84 26.64 148.86 129.55
Bra034156 (AZG1)
 3.58 4.64 3.91 2.33 4.53 1.48 0.13 0.07 0.64 0.26 0.24 0.54 0.12 1.1 1.56 0.35 0.23 0.15 0.31 0.16 0.11 0.25 1.13 0.35 0.23 0.59 0.24 0.72 1.0 1.47 0.24
Bra034713 (NAC1L)
 8.17 11.46 9.25 1.98 2.44 2.08 0.07 0.08 0.55 0.41 1.24 0.67 0.22 0.46 1.55 0.29 0.14 0.84 0.32 0.6 0.38 1.08 0.67 0.34 0.27 0.15 0.41 0.74 0.88 1.21 0.18
Bra035554 (VTC5)
 1.02 2.08 2.04 0.98 1.22 0.9 0.35 0.33 0.24 0.27 0.17 0.24 0.29 0.33 0.42 0.51 0.13 0.73 0.32 0.29 0.16 0.36 0.96 0.24 0.27 0.1 0.2 0.18 0.23 0.3 0.35
7.15 7.22 4.68 5.36 0.67 1.54 1.21 1.56 1.79 1.83 2.27 2.08 2.29 1.69 1.5 1.16 1.82 1.65 1.89 2.08 1.86 1.7 1.59 2.13 2.32 2.76 2.22 1.63 2.72 2.46 3.09
32.95 31.95 36.04 36.94 24.03 14.57 5.52 7.51 11.95 11.96 12.04 13.01 10.35 12.26 13.45 10.47 10.19 14.74 12.28 10.96 11.38 9.02 20.69 9.23 8.93 12.93 9.51 12.74 10.53 13.28 10.37
Bra039006 (ACO1)
 0.91 0.76 0.37 0.29 0.03 0.03 0.1 0.22 0.1 0.16 0.1 0.08 0.07 0.07 0.04 0.08 0.06 0.18 0.1 0.19 0.15 0.06 0.16 0.1 0.06 0.12 0.09 0.07 0.08 0.14 0.07

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)