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Heatmap: Cluster_146 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra001199 (ELO1)
 - - - - - - - - - - - - 3.17 - - - - 4.46 - - - - - - - - - - - - -
-1.71 -2.15 -1.66 -2.09 -0.9 -1.48 -0.97 -0.78 -0.77 -0.53 -0.78 -0.7 1.83 -1.01 -1.34 0.14 -0.18 3.14 -0.27 -0.36 -0.88 -0.47 0.37 -0.19 -0.08 -0.05 -0.55 -0.43 -0.79 -1.06 -0.39
Bra001637 (TCTP1)
 -0.49 -0.11 -0.02 -0.18 -0.32 -0.52 -0.54 0.05 -0.43 -0.27 -0.48 -0.31 0.58 0.43 0.48 0.17 0.26 2.09 0.37 -0.18 -0.15 -0.09 0.59 -0.95 -0.8 -0.46 -0.86 -1.28 -1.13 -0.81 0.05
Bra002041 (GPAT5)
 - - - - - - - - - - - - 2.81 - - - - 4.21 - - - - 2.39 - - - - - - - -1.75
Bra003309 (AFO)
 -0.39 - - - - - -0.21 - - - - -1.89 3.43 - - -0.45 -2.21 3.52 - - - 0.18 1.77 - - - -2.29 - - - 0.24
Bra004162 (PAP2)
 - - - - -1.09 -0.56 -2.77 - -2.9 -5.29 -4.9 -2.97 -0.02 0.53 0.21 -2.05 -3.35 4.06 -1.59 -2.17 -3.28 -2.14 2.44 -1.32 -0.61 -3.69 -1.66 -1.5 -2.34 -2.23 -1.95
Bra004204 (TRM22)
 -1.41 -3.63 -2.77 -1.13 0.0 -0.47 -1.02 -0.58 -2.47 -1.33 -0.79 -1.26 2.11 0.61 0.05 -0.41 -0.76 3.23 0.06 -1.55 -3.57 -4.65 1.04 -0.53 -1.92 -1.0 -1.23 -0.45 -2.43 -1.48 0.21
Bra004617 (BOP2)
 -1.37 -0.05 -2.05 -2.66 -1.18 0.0 - -0.29 - -0.35 -1.63 -1.03 2.99 -3.95 0.19 -2.22 -1.99 3.11 -2.56 -1.38 -3.02 - 1.61 -1.53 -3.02 -1.25 -1.27 -2.22 -1.33 -0.49 -0.33
Bra004719 (RLP29)
 -4.82 - -4.4 - -0.77 -2.27 -1.46 -2.73 -0.92 -0.69 -3.26 -1.84 2.71 -0.56 -0.37 -0.64 -2.22 3.21 -0.89 -0.66 -3.23 -0.81 1.45 0.22 -0.35 -1.4 -0.8 -0.69 -1.49 -0.7 -0.21
Bra005137 (GPAT6)
 -4.15 -3.3 -4.94 -5.07 -0.8 -1.91 -0.77 -1.7 -0.38 0.18 -0.9 -0.52 1.98 0.06 -0.62 0.43 1.39 3.0 -0.13 -0.88 -1.24 -0.82 0.88 -1.04 -1.24 -1.77 -1.82 -0.83 -0.81 -0.67 -0.42
Bra005917 (PGIP2)
 -2.94 -2.43 -2.4 -1.44 -2.62 -3.71 -1.83 -5.76 -4.25 -1.63 -2.58 -2.03 1.01 -3.14 -3.05 -0.97 -1.04 4.18 -2.41 -2.59 -3.62 -2.4 0.73 -1.27 -0.5 -0.53 -0.5 -1.96 -2.64 -0.5 0.58
-0.56 -2.01 -1.4 -0.94 0.14 -0.76 -1.15 -1.32 -0.53 -0.51 -0.51 -0.66 1.37 0.47 -0.2 0.12 0.03 2.65 -0.47 -1.19 -0.92 -1.22 0.82 -0.22 -0.72 0.38 -0.61 -0.3 -0.31 -0.24 -0.13
- - - - -3.26 - -4.29 - -5.35 - -4.4 - 3.0 - - - -5.1 4.34 -4.07 - -3.29 -5.37 1.18 - - - - - - - -5.07
-0.97 -0.65 -0.08 -1.03 -0.68 -1.51 -2.03 -2.14 -1.59 -0.25 -1.18 -1.31 0.04 -1.99 -2.06 -1.37 -1.98 3.91 -0.98 -1.83 -2.36 -1.14 2.35 -2.43 -2.27 -2.79 -3.53 -2.87 -2.96 -2.94 -2.55
Bra007961 (RSW10)
 -0.27 0.34 0.97 -0.75 -1.28 -0.92 -0.9 -0.08 -0.76 -0.71 -0.61 -0.8 -0.24 -0.95 -0.67 -1.12 -0.43 2.78 0.69 -0.94 -0.98 -1.17 1.1 -0.11 -0.87 -0.21 -1.22 -0.71 -0.5 -0.11 0.23
- - - - -1.8 - - - - - - - 2.98 0.47 -0.08 - - 4.03 -2.19 - - - 1.76 - - -0.99 - - - - -
-1.95 -2.94 -2.94 -2.62 -1.27 -2.56 -0.42 -0.36 -0.55 -0.5 -0.22 -0.62 1.88 -0.52 -0.75 -0.06 -0.64 3.41 0.1 -0.47 -1.15 -1.43 0.54 -1.12 -0.97 -1.13 -1.14 -0.82 -1.28 -1.4 -0.33
Bra010306 (CDEF1)
 - - - - - - - - - - - - 2.8 - - - - 4.42 - - - - 1.42 - - - - - - - -7.94
-3.46 -3.76 -2.93 -4.16 -0.41 -1.81 -0.76 -1.55 -1.27 -0.65 -0.59 -0.77 1.75 0.54 -0.55 0.3 0.02 2.78 -0.9 -0.94 -0.95 -1.0 0.65 0.01 -0.01 0.19 -0.25 0.41 -0.38 -0.09 0.1
Bra011506 (EDA9)
 -3.16 -4.05 -3.29 -4.61 -1.85 -1.75 -1.48 -0.08 -1.38 0.03 -1.04 -1.31 1.14 -0.52 -0.65 0.1 -0.4 3.4 0.11 -1.0 -0.98 -0.72 1.5 0.07 -0.04 -0.29 -0.6 -0.99 -1.62 -1.86 -1.23
Bra012067 (GMD1)
 - -2.38 -1.89 -3.34 0.24 -2.16 -2.95 - -1.19 - -1.85 -2.86 3.17 -0.64 -0.63 -2.48 -2.69 3.58 -1.79 -1.37 -1.37 - 1.23 -0.89 -3.44 -1.42 - -2.54 -1.95 - -0.75
Bra012131 (MKK19)
 -2.8 -2.05 -3.93 - -1.56 -0.7 -4.94 -1.44 -3.94 -2.86 -2.47 -4.9 -2.0 -3.46 -0.77 -2.94 -4.67 4.22 1.29 -1.41 -3.74 -2.31 2.13 -2.46 - -2.51 -4.82 -2.58 -2.03 -0.95 -2.23
Bra012274 (RSH)
 - -9.69 - - -8.94 - -8.26 -10.05 -9.2 -7.43 - -9.06 0.96 -7.6 -8.65 -7.48 - 4.54 -6.31 - -7.7 -7.83 2.52 -6.96 -9.79 -6.91 -7.68 -8.78 -7.26 -8.96 -6.99
Bra012901 (OBP1)
 -0.46 -0.12 0.17 -0.58 -0.27 -0.34 -1.36 -1.62 -1.74 -0.13 -2.56 -0.67 2.31 -0.27 -0.85 0.31 0.12 2.45 -0.5 -0.23 -1.96 0.21 1.3 -1.8 -1.98 0.36 -1.63 - -1.02 -2.34 -0.36
Bra013422 (IRT1)
 - - - - - - - - - - - - 3.35 - - - - 4.38 - - - - - - - - - - - - -
- - - - - - - - - - - - 2.54 - - - - 4.54 - - - - 0.98 - - - - - - - -
Bra014794 (PT)
 -0.72 -2.67 -2.71 -1.73 -0.84 0.17 -0.29 -0.0 -0.59 -0.67 -0.18 -0.43 0.99 0.16 -0.03 -0.09 0.13 2.85 0.73 -0.7 -0.55 -1.13 0.32 -0.55 -0.65 -1.05 -0.54 -0.86 -1.15 -0.85 0.38
- - - - - - - - - - - - 3.56 - - - - 4.21 - - - - -0.55 - - - - - - - -
- - - - - -4.28 -2.54 -4.29 -0.33 -0.37 -2.63 -4.4 3.07 - - -1.73 -2.23 4.01 -3.36 -1.88 -3.23 -2.82 0.92 -3.34 -4.24 -2.67 -1.86 -2.02 -2.05 -1.82 -4.14
Bra017988 (iqd15)
 -4.48 -2.18 -0.58 -2.56 0.04 -0.67 -1.65 -1.48 -0.88 -2.29 0.24 -1.83 2.45 -0.03 0.29 -0.4 -0.73 2.87 0.36 -0.73 -1.46 -2.4 1.21 -1.22 0.23 -2.57 -1.18 -2.64 -0.45 -2.16 -0.1
Bra019257 (UGE2)
 -0.34 -1.07 -1.64 -2.24 -1.66 -1.36 -3.19 - -4.57 -1.55 - -2.11 1.47 -1.98 -0.87 -4.49 -2.21 4.36 -1.43 -2.62 -2.39 -1.82 0.99 -3.18 - - -3.6 - -3.48 -3.58 -
- - - - - - - - - - - - 2.57 - - - - 4.41 - - - - 1.9 - - - - - - - -
-6.02 -1.15 -1.79 -2.33 - -7.21 - -5.27 -3.72 - - - 2.97 -6.03 -4.55 -5.96 - 4.08 - -5.07 -7.1 -5.24 0.52 -1.75 -1.01 -0.82 -2.29 -1.41 -1.36 -0.48 -0.87
Bra019619 (LFY)
 - - - - - 0.24 0.17 - - - - - 3.01 - - - - 3.98 0.39 - - - 1.84 - - - - - - - -
Bra019823 (MKD1)
 -4.2 -1.43 -1.84 -3.18 -3.46 - -4.69 -1.13 - -4.52 -2.91 - -0.92 - -2.06 - - 4.54 -0.9 -3.29 -3.35 -3.48 2.1 - -3.41 - - -4.27 - -3.51 -
-3.38 - -3.98 - -3.07 -2.89 -1.87 -2.37 -2.67 -0.45 -2.21 -5.64 1.59 -1.67 -1.86 -1.99 -1.75 4.13 -1.27 -1.33 -4.69 -2.31 1.37 -1.45 -1.32 -0.66 -1.52 -1.23 -1.26 -1.03 -0.64
-7.15 -4.84 -3.07 -3.32 -4.65 -5.77 -7.49 -4.03 -6.22 -4.13 -5.82 -4.29 3.07 - - -5.49 -3.6 4.08 - -6.21 - - 2.33 - - - - - -5.25 -7.39 -
- - - - - - - -9.05 - -7.46 - - 3.37 - - - -6.33 4.21 - - -7.56 - 1.09 - - -9.07 - - - - -
Bra021934 (MEE24)
 - - - - - - - - - - - - 3.33 - - - - 4.22 - - - - 1.25 - - - - - - - -
Bra022381 (POK2)
 -0.29 -1.15 -0.11 -0.82 0.27 -0.41 -0.36 -1.05 -0.69 -0.6 -0.55 -0.78 1.65 -0.41 -0.5 0.15 -0.01 2.28 -0.02 -0.44 -0.53 -0.43 0.58 -0.48 -0.57 -0.31 -0.98 -0.37 -0.58 -0.23 0.34
Bra023112 (TTG2)
 - - - - -0.89 -0.44 -3.9 -2.62 - -3.82 -2.86 -2.19 1.61 0.04 - - - 4.52 -0.26 - -2.11 - -0.25 - - -3.78 -3.78 - - - -
-1.52 1.18 2.07 0.14 -4.55 -5.83 -3.48 -2.08 -2.9 -2.37 -1.94 -2.43 -2.49 -5.49 -3.45 -3.14 -1.41 3.84 -0.53 -3.77 -6.34 -2.23 2.08 -3.59 -3.11 -1.69 -3.41 -4.18 -3.84 -1.58 -0.81
-0.52 -0.46 -0.61 -0.16 0.29 -1.01 -0.46 -0.32 -0.26 0.02 -0.37 -0.28 0.63 0.03 -0.16 -0.29 -0.18 2.24 0.24 -0.41 -0.64 -0.4 1.05 -0.59 -0.55 -0.25 -0.28 -0.45 -0.66 -0.61 -0.03
Bra026570 (RNS1)
 -4.86 -4.19 -1.97 -5.17 -2.26 -2.15 -2.68 -2.76 -1.27 -1.17 -2.41 -1.42 -0.92 -1.98 -2.49 -2.18 -1.01 4.36 -1.15 -2.81 -2.34 -1.64 2.12 -4.74 -2.49 -3.59 -2.91 -3.89 -3.21 -4.32 -3.2
- - - - - - - - - - - - 2.9 - - - - 4.25 - - - - - - - - - - - 2.16 -
Bra027549 (AtBBE25)
 -4.3 -1.06 -0.79 -3.38 0.0 -0.51 -0.15 -0.67 -2.3 -1.85 -1.66 -0.9 2.6 -3.16 -2.23 -1.55 -0.76 3.26 -2.26 -1.25 -1.26 -1.95 1.86 -1.33 -1.44 -1.17 -1.03 -1.11 -1.2 -1.51 -1.24
Bra028786 (KCS19)
 - - - - - - - - - -4.49 - -5.08 3.46 - - -3.86 - 3.96 - - - - 2.0 - - - - - - -3.1 -2.3
Bra029305 (LFY)
 - - - - - - - - - - - - 2.02 - - - - 4.54 - - - - 0.89 - 0.9 - - - - - -
Bra030763 (CRT2)
 -2.1 -2.15 -2.11 -1.71 -0.94 -0.25 -0.39 -0.33 -0.29 -0.09 -0.66 -0.81 1.05 -1.13 -0.53 -0.36 -0.18 2.47 0.85 -0.1 -0.67 0.41 0.38 0.2 0.05 -0.02 -0.03 -0.01 -0.19 -0.35 -0.13
Bra031793 (GAL2)
 - -0.33 0.19 - - - - - - - - - -0.67 - - - - 4.53 - - - - 2.23 - - - - - - -0.72 -
Bra032889 (AGP31)
 -2.45 -2.76 -1.48 -2.17 -1.39 -1.38 -1.96 -1.96 -0.75 -0.8 -0.91 -1.41 1.61 -0.43 0.39 0.09 -0.39 3.39 0.45 0.02 -0.95 -1.32 1.66 -1.23 -1.04 -1.29 -1.8 -2.1 -1.56 -1.62 -1.51
Bra033366 (GRXS1)
 - -0.56 - - - - -2.45 - - -1.82 - -2.93 0.18 - - - -0.48 4.16 - - - - 2.83 - - -0.11 -2.22 - - -0.54 0.14
- - - - - - -2.9 -4.26 - -4.16 - - 3.55 -1.87 -4.68 - -3.93 4.07 - - -4.94 - 0.86 - - - - -5.05 - - -
Bra034774 (FLR1)
 -0.73 -2.26 -1.65 -1.74 -0.3 -2.06 -0.39 -0.54 -1.38 0.02 -0.74 -1.09 1.8 -0.69 -1.32 -0.57 0.53 2.84 -0.3 -0.55 -0.92 -1.28 0.64 -0.23 -0.49 0.26 -0.44 -0.72 -0.6 -0.04 0.12
- - - - 0.9 -0.06 - - -2.78 - -1.56 -3.5 2.55 1.16 0.77 -2.41 -1.3 3.79 -0.1 - -3.36 -1.74 -0.4 - - -0.92 - -0.87 -3.52 - -2.48
Bra037302 (PUP1)
 -1.34 -0.48 0.13 -0.25 -0.69 -0.55 -1.18 -0.0 -1.31 -0.52 -1.14 -0.55 -1.23 -1.32 -1.33 -0.54 0.09 3.21 0.28 -0.58 -0.75 -1.17 1.86 -1.16 -0.81 0.13 -0.89 -1.27 -1.19 -1.11 -1.97
Bra038700 (FLR1)
 - - - - - -3.66 -2.34 -2.58 -0.72 -2.2 -2.81 -2.36 2.34 -1.6 -2.01 -0.5 -0.02 3.95 -1.65 -1.02 -1.33 -1.59 1.23 -1.77 -1.59 -1.47 -1.75 -2.32 -2.26 -1.75 -0.58
Bra040525 (DEG28)
 - - - - - - - - - - - - 2.43 - - - - 4.42 - - - - 2.07 - - - -8.59 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.