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Heatmap: Cluster_86 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000625 (CPI1)
 0.25 0.31 1.09 0.65 -0.47 -0.46 -0.06 -0.01 -0.85 -0.23 -0.8 -0.23 0.62 -0.53 -0.34 0.12 -0.21 0.33 -0.91 -0.89 -0.34 -0.36 1.07 0.04 0.07 0.18 -0.05 -0.25 -0.27 -0.21 -0.03
0.57 1.0 1.43 1.08 -0.57 -0.06 -0.05 0.07 -0.77 -0.02 -0.5 -0.53 -0.17 -0.72 -0.53 -0.37 -0.14 0.19 -0.52 -0.17 -0.32 0.15 1.35 -1.04 -1.0 -0.11 -0.84 -0.86 -0.25 -0.55 -1.09
Bra001567 (LIK1)
 0.11 -0.78 3.01 1.08 -0.23 -0.36 -1.45 0.3 -1.01 - -0.01 -0.45 0.2 -3.74 -2.77 -2.24 -0.44 0.26 0.8 -3.99 -2.02 -0.09 2.02 -0.93 -4.02 -3.09 -1.4 -3.8 -1.88 -0.76 0.17
Bra001638 (SWEET16)
 - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-1.43 0.43 2.5 2.13 -0.88 -3.14 -0.95 -1.2 -1.58 0.78 0.39 -0.52 1.08 -1.94 -2.73 1.02 0.98 1.03 -1.45 -1.46 -0.34 -0.89 0.39 -2.57 - -0.43 -3.13 -2.91 - -1.66 -2.4
2.09 0.49 3.97 1.86 - - - - - -0.88 - - - 0.33 - - - -0.87 - - - -0.91 0.25 - - 0.93 - - - - -
-0.1 1.45 2.65 2.74 -2.98 -4.3 0.22 1.24 -2.02 -0.38 -1.81 -0.99 -0.16 -4.83 -3.02 -2.91 -2.67 -1.07 -2.19 -3.97 -3.82 -1.46 2.25 -2.6 -3.02 -4.87 -1.92 -4.9 -3.14 -0.32 -3.69
-0.37 0.14 1.73 1.23 -0.33 0.06 -1.46 -1.2 -1.19 -0.38 -0.37 -0.55 -0.21 -0.03 0.13 -0.22 -0.56 0.46 -0.93 -0.58 -0.65 -0.35 1.57 -0.61 -0.97 -0.41 -0.54 -0.87 -0.6 -0.22 1.05
Bra004712 (HLH1)
 1.04 1.46 2.44 0.69 -2.2 -3.14 -1.18 -0.67 0.26 0.37 0.61 0.24 -0.56 -1.68 -1.57 -0.74 -0.43 -0.64 -1.54 -0.48 0.03 -0.61 -0.24 -0.23 -0.56 0.27 -0.17 -1.03 -2.08 -0.2 -1.12
-0.48 0.72 1.0 0.88 0.4 0.27 0.16 0.27 -1.57 -0.2 -1.68 -0.94 1.2 -1.22 -0.58 0.01 -0.3 0.49 -1.08 -0.46 -0.71 -0.73 1.2 -0.05 -0.1 -0.35 -0.02 -0.73 -1.23 -0.76 0.35
Bra006236 (ROXY2)
 - 1.4 3.24 3.21 -1.58 - -2.36 -0.54 -1.78 -3.23 -2.32 - -0.15 -1.87 - -1.33 -1.13 - -3.44 0.04 -3.26 -0.73 0.64 -3.22 -0.91 - -1.53 -3.16 - -0.97 -0.37
Bra006324 (bZIP3)
 -1.25 2.1 2.05 -0.2 -0.89 -3.19 -2.39 -1.88 -2.9 -0.74 -1.0 -0.83 -0.92 - - -1.54 -0.9 -3.24 - -0.88 -1.22 -0.91 1.06 0.06 -0.14 1.92 0.01 -2.2 -0.42 1.88 0.91
-0.24 -0.1 0.51 0.24 -0.74 -0.71 0.25 0.24 -1.35 -0.88 -0.81 -1.28 0.56 -1.5 -1.03 -0.06 -0.06 1.14 -0.2 -0.56 -0.43 -0.41 0.72 0.23 0.41 0.28 0.43 -0.14 -0.09 0.24 0.94
0.2 1.24 2.52 1.53 0.98 -0.16 -0.85 -0.46 -1.42 -0.87 -0.9 -1.85 -1.57 0.06 0.05 -0.11 -1.98 0.15 -0.31 -1.01 -0.88 -1.67 0.46 -0.7 -0.78 -0.11 -1.61 -2.53 -0.88 -0.22 -0.46
-0.74 0.18 1.93 1.24 -0.86 -1.37 -0.26 0.47 0.12 0.34 0.11 -0.03 0.17 -0.6 -0.31 -0.13 0.02 -0.08 -0.58 0.01 -0.22 0.39 0.72 -0.49 -0.19 -0.63 -0.54 -1.07 -1.39 -1.36 -1.33
Bra007890 (GSTU11)
 - - 3.09 - -2.03 -1.46 - - - - - -1.43 -1.8 - - - -1.36 - - -2.97 - -1.54 4.24 0.45 - - -2.89 - - - -
Bra008754 (GALK2)
 - - 3.53 - - - - - - - 0.54 - - - - - - - - - - - 4.11 -0.49 - - - - - - -
0.07 2.13 2.55 2.01 -1.82 -1.88 -2.14 -1.75 -1.35 -1.37 -1.99 0.57 - -1.56 0.96 -0.37 -1.84 0.56 -0.97 - -0.41 - 2.08 - - - - - -1.09 -0.77 -0.41
Bra010234 (beta1-COP)
 0.15 0.37 0.1 0.22 0.12 -0.34 -0.17 0.18 -0.2 0.04 -0.16 -0.12 0.18 -0.06 -0.14 0.02 -0.05 0.29 -0.16 -0.31 -0.38 -0.14 0.26 -0.03 -0.1 0.03 -0.0 -0.06 -0.18 0.04 0.22
Bra010639 (AGP3)
 0.82 2.27 3.5 2.65 -0.25 - - -1.5 - 0.03 -1.42 -2.54 - -2.54 - - -1.21 - -2.95 -1.22 - - -0.05 - - - - -0.82 - 0.43 -
-0.5 -0.2 -0.28 0.04 -0.09 -0.1 0.12 0.36 -0.91 -0.38 -0.62 -0.41 0.43 -0.55 -0.41 -0.37 0.13 0.96 -0.41 -0.48 -0.07 -0.19 0.45 0.35 0.26 0.56 0.25 -0.36 -0.09 0.23 0.43
Bra011562 (DEG4)
 0.86 1.56 3.46 3.11 -0.55 -2.31 -2.59 -3.35 -1.38 -0.02 0.13 -0.39 -1.9 -1.86 - -1.48 -1.55 -1.6 - - -2.2 -1.29 - - - - - - - - -
-0.02 -0.06 0.64 0.98 -0.05 0.16 -0.12 -0.39 -0.45 -0.41 -0.29 -0.32 0.4 -0.12 0.09 -0.04 -0.4 0.37 -0.29 -0.12 -0.05 -0.31 0.68 -0.02 -0.38 -0.27 -0.47 -0.29 -0.33 -0.24 0.54
2.13 2.83 3.06 2.73 -2.18 -2.14 -2.26 -1.32 -0.7 - -2.24 0.09 - - -1.82 - - -0.18 - - - -1.25 - - - - - - - - -
Bra012016 (NF-YB11)
 0.11 0.25 0.59 0.49 0.16 -0.35 -0.3 0.33 -1.08 -0.28 -0.49 -1.0 0.71 -0.49 -0.19 0.17 -0.46 0.17 -0.56 -0.28 -0.0 -0.38 0.81 -0.04 0.18 0.04 0.21 0.21 -0.42 -0.35 0.21
Bra012129 (RPP5)
 - 1.18 4.43 - - 1.65 - - - - - - - - - - - - - - - - - - - - - 2.0 - - -
Bra012993 (COBL5)
 -0.57 0.79 2.49 0.78 -0.58 -3.13 -1.51 -0.21 -1.08 -0.41 -1.18 -0.03 0.46 -3.13 -1.1 -1.39 0.47 0.9 -1.43 -2.18 -1.17 -0.53 2.06 -2.94 -0.79 -0.34 -0.68 -1.64 -0.01 0.33 -1.16
0.84 1.66 3.07 0.9 1.16 -0.33 -0.88 0.48 -0.84 -0.38 - -0.86 - -0.17 - -3.66 0.11 -2.0 -2.54 0.32 -1.94 -1.32 -1.47 -1.04 - -1.27 -0.95 -1.25 -2.48 0.72 -0.87
0.02 -0.9 0.69 0.96 0.66 0.33 -0.2 -1.08 -0.24 -0.57 -0.13 -0.6 0.37 -0.08 0.03 -0.31 -0.33 0.71 -0.06 -1.33 -0.09 -0.4 1.36 -0.73 -0.16 -0.74 -0.66 -0.33 -0.15 -0.09 0.2
Bra014789 (ARP1)
 0.73 1.24 3.21 -1.05 - - -0.01 - -2.44 -2.42 0.0 0.12 -2.08 -1.94 - 0.75 -1.2 - - -1.2 -0.74 -0.8 2.35 - -1.28 0.81 -1.3 0.08 -2.26 - -0.66
- - 3.51 -2.83 - - - - 2.35 - - 1.87 - - - - - - - - - - 1.2 - 0.15 0.07 0.09 1.38 - - 1.36
0.51 1.46 1.12 0.73 -1.24 -2.33 -2.14 -0.4 -1.46 -0.73 -1.21 -1.21 -0.48 -3.17 -1.29 -1.41 -0.56 1.34 -0.88 -1.43 -2.21 -1.14 1.37 -0.17 0.21 0.99 0.42 -0.63 -0.64 1.04 0.9
Bra018160 (DIN6)
 -1.03 1.15 3.02 0.55 -5.33 - -6.08 -4.36 -7.07 -4.61 -8.58 -5.5 -3.89 -6.63 -5.69 -5.92 -4.65 -3.59 -5.74 - -6.11 -3.84 4.12 -5.72 -8.43 -1.92 -4.99 -6.24 -7.21 -3.39 -1.23
Bra018710 (STMP6)
 -1.2 0.8 0.81 -1.09 -0.76 0.32 -1.81 -1.81 -3.37 -1.13 -2.79 -1.82 -0.76 -2.02 0.29 -0.5 0.56 1.65 -0.88 -2.29 -2.05 0.55 3.42 -0.76 -2.2 -1.75 -1.39 -3.81 -4.03 -0.67 -1.19
0.42 1.14 1.76 0.44 0.2 -0.72 -1.02 -0.57 -1.81 -1.11 -1.21 -1.47 -0.52 -0.32 -0.19 -0.99 -0.98 -0.82 -1.57 -0.93 -0.8 -1.59 2.33 -0.5 -0.77 0.7 -0.21 -0.08 0.34 0.06 -1.15
Bra019905 (PRS3)
 0.41 0.5 0.46 0.31 -0.48 -0.6 -0.1 0.42 -0.96 -0.31 -0.45 -0.33 0.27 -0.25 -0.22 -0.14 -0.03 0.66 -0.24 -0.53 -0.4 -0.18 0.65 -0.12 -0.06 0.23 -0.04 -0.46 -0.38 0.18 0.46
Bra021292 (BGLU44)
 -0.04 -0.06 0.57 -0.89 -0.83 -1.73 -0.14 -0.24 -1.06 -0.17 -0.39 -0.46 0.27 -2.33 -2.07 0.08 0.06 1.22 -0.05 -0.56 -0.38 -0.11 0.91 0.26 0.5 0.25 0.56 0.09 -0.08 0.61 0.54
-0.0 0.66 0.82 0.25 0.06 -0.21 -0.64 -0.49 -0.19 0.06 -0.32 -0.04 -0.71 -0.63 -0.09 -0.26 -0.36 -0.01 -0.3 -0.67 -0.75 -0.46 1.37 0.16 -0.12 0.36 0.15 -0.04 0.04 0.41 -0.72
Bra022957 (FES1)
 0.25 2.34 3.46 -0.18 -0.15 -1.15 -4.91 -0.71 0.33 -0.36 -0.23 -2.69 - - 0.38 -2.43 -1.06 -1.46 -2.93 -1.62 - -1.14 1.78 -2.69 -1.66 - - -2.32 - -1.56 -2.48
Bra023336 (NADP-ME2)
 -0.73 0.11 1.22 -0.9 0.02 -0.08 -1.02 -0.8 -1.03 -0.04 -0.88 -0.6 -0.32 -0.63 -0.49 -0.04 0.08 1.12 0.07 -0.77 -0.99 -0.25 2.61 -0.45 -0.57 -0.5 -0.55 -0.74 -0.96 -0.14 -1.02
1.36 1.7 1.68 2.33 - -0.1 1.74 0.06 -0.25 -1.14 - - -0.87 1.25 -0.62 - - 0.02 -0.92 - -0.18 - 1.26 - - -1.05 -0.1 - - - -0.92
0.48 0.02 1.53 -0.34 0.07 0.11 -1.18 -1.13 0.39 0.44 0.57 0.69 -1.21 -0.89 -0.53 -0.81 -0.6 -0.41 -0.5 -0.68 -0.74 0.01 -0.35 -0.25 -0.26 0.29 -0.12 0.01 0.4 0.69 -0.03
0.58 0.92 0.72 0.81 0.92 0.33 -0.17 -0.19 -1.19 -0.67 -0.65 -0.29 0.81 -1.02 -0.63 -0.42 -0.29 0.38 -1.2 -0.52 0.25 -0.53 0.69 -0.78 -1.24 -0.25 0.13 0.33 -0.72 -0.4 -0.22
0.56 1.55 2.02 0.82 -3.23 -2.65 -2.37 -2.13 -1.87 -0.34 -0.75 -0.27 -0.95 -4.5 -4.38 -2.21 -0.85 1.27 -1.06 -1.98 -1.78 -1.51 1.73 -0.85 -0.61 1.33 -0.03 -1.57 -1.09 1.0 0.67
Bra028281 (TRM24)
 -0.53 0.52 3.32 1.57 -0.1 -0.78 -2.56 -1.52 -1.41 -3.47 -0.57 -2.63 0.51 -1.25 -0.3 -1.6 -1.19 1.48 -0.41 -1.4 -1.4 -2.48 0.8 -1.98 -4.47 -0.52 -1.25 -0.85 -1.64 -0.96 -2.65
Bra028865 (APD7)
 1.29 2.02 2.49 1.13 -0.44 -3.58 -0.76 -0.37 -1.18 0.22 -0.45 -0.04 -0.87 -3.2 -2.94 -0.95 -0.37 -0.94 -0.93 0.64 0.22 0.04 -1.79 -0.92 -1.81 -0.21 -0.9 -2.33 -1.64 -0.14 -1.36
- - 3.65 - - - - - - - - - - - - - - - - - - - 4.21 - - - - - - - -
- 1.76 4.09 - - - - - - - 2.27 - - - - - - - - - - - - - - - - - - 1.43 1.63
1.01 0.61 1.38 0.97 1.15 0.03 -0.21 -1.33 -1.15 -0.45 -0.62 -0.8 1.42 -0.82 -1.69 -0.71 -0.77 0.36 -1.58 -1.75 -1.81 -0.94 1.27 -0.26 -0.56 -0.02 -0.38 0.12 -1.43 -0.68 -0.4
-0.99 1.0 2.79 1.71 -0.39 -0.07 -1.21 -1.24 -1.79 -2.01 -2.51 -4.07 1.09 -0.82 -1.38 -0.58 -1.91 0.71 -2.46 -1.31 -0.74 -1.78 2.14 -1.24 -1.66 -0.29 -0.94 -0.88 -2.78 -1.08 -2.25
Bra031072 (FMO1)
 2.14 1.66 2.62 2.89 -1.84 -2.46 -1.77 0.55 -1.2 -0.5 -2.11 0.31 -3.28 - - - -2.83 - -2.38 - -4.43 -0.25 - -3.03 -3.43 -0.3 -4.3 - -1.28 0.92 -1.48
0.71 1.22 1.85 -0.08 0.98 -2.4 -1.47 -0.32 -1.02 0.49 -0.34 -0.53 -0.64 -3.52 -3.04 -0.34 0.01 0.89 -1.25 -0.67 -1.14 0.27 1.42 -0.57 -0.92 -0.96 -0.17 0.35 -1.5 0.5 -2.04
Bra031128 (TAX2)
 -3.83 0.48 1.82 -0.64 0.29 -2.48 -2.25 -0.57 -1.62 0.31 -1.64 0.8 -0.12 -1.66 -1.87 -1.47 -1.17 1.81 -0.56 -2.65 -0.32 -0.63 2.91 -1.52 -1.16 -0.43 -0.79 -0.69 -3.44 -0.4 -2.05
Bra031221 (WRKY59)
 -2.34 1.58 - -1.31 -1.08 -0.36 - -2.46 - 0.33 - -1.1 - -1.35 - -0.87 -1.57 2.1 - - -1.05 0.18 3.87 -2.68 -2.71 -1.14 - -0.89 -0.93 -0.62 -
0.51 1.4 1.76 0.93 -1.5 -0.97 -0.84 -0.76 -0.61 -0.56 -0.43 -0.57 -0.67 -1.34 -0.82 -0.69 -0.53 0.59 -0.42 -0.85 -1.69 -1.38 1.17 -0.29 0.1 0.25 0.17 -1.28 -0.82 0.16 0.94
Bra032935 (PIRL2)
 0.54 1.49 1.62 0.95 -1.27 -0.14 0.39 -0.31 -1.62 -1.49 -2.51 -2.45 -2.27 -3.79 -1.5 -2.18 -1.4 0.19 0.02 -1.73 -3.01 -1.19 1.56 -0.25 -0.24 1.42 -0.44 -1.55 -0.33 0.76 1.09
Bra034022 (CYP735A2)
 - - 3.06 - - - - - - - - - 2.64 - - - - - - - - - 3.43 - - - - - - - 2.49
Bra035645 (XPO2)
 2.23 0.9 3.7 2.67 - - 0.15 - - -0.25 -1.36 - - - - - - - - - - - - - - - 1.47 - - - -
Bra036502 (QWRF3)
 0.01 1.62 3.69 3.38 -2.04 - -1.13 - -4.03 -3.51 -6.03 - -4.1 - - -0.2 -4.8 0.63 -2.18 - - - - - - - - - - - -4.56
Bra036701 (MIOX2)
 -1.34 -0.43 3.53 2.27 - - - -7.75 -7.9 - -7.11 - -7.82 - - - -7.8 -2.52 -5.27 -6.37 - -4.81 3.72 - - -3.7 - - - - -7.87
Bra038169 (SAR1)
 -0.83 -0.35 -0.09 -0.63 0.21 -0.32 0.05 0.24 -1.17 -0.35 -0.27 -0.01 0.61 -0.13 -0.35 -0.32 0.13 0.93 -0.02 -0.47 0.01 -0.29 0.49 0.23 0.12 0.27 0.4 -0.09 -0.31 0.19 0.27
Bra038347 (PPRT1)
 -0.18 1.37 3.71 2.29 0.72 - - -1.58 - -0.3 -1.6 -3.22 -0.34 - - -0.08 -1.95 -2.18 -2.34 - -0.47 -3.1 -0.73 - -1.48 -1.55 -3.12 -1.32 -0.57 -2.94 -1.29
Bra038577 (FBS1)
 -1.25 -0.25 2.59 0.59 0.67 -2.54 - - -2.69 - -2.51 -3.17 1.01 -3.41 -3.04 -1.32 -1.79 0.68 -2.37 -3.46 - -2.65 2.64 -1.01 1.04 -1.23 -1.21 0.36 0.9 -0.2 0.47
Bra039021 (MIOX2)
 -0.8 0.24 4.03 2.55 - - - -4.5 - - - - -5.14 - - - - -3.53 - - - - 2.77 - - -3.67 - - - -4.71 -
Bra041014 (MIOX4)
 - -1.49 2.56 -2.56 - - - -0.9 - -0.12 - -1.48 -1.73 - -2.75 - - -0.44 - 0.26 - 0.65 4.23 - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.