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Heatmap: Cluster_262 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000639 (ORP1C)
 -0.1 0.26 0.45 -0.3 0.3 0.3 -0.44 -0.55 -0.38 -0.4 -0.5 -0.19 -0.66 0.28 0.35 -0.17 -0.34 0.36 -0.23 -0.27 -0.5 -0.35 1.59 -0.16 -0.27 0.13 -0.18 -0.1 0.11 -0.15 -0.25
Bra000659 (ARGAH1)
 -0.62 0.05 0.32 0.25 1.86 1.52 -0.63 -1.89 -1.82 -0.93 -2.53 -1.4 -0.32 1.09 -0.52 -1.05 -1.47 0.34 -0.16 -0.38 -1.03 0.17 2.78 -1.92 -2.19 -2.27 -2.21 -1.74 -1.65 -1.87 -1.26
-0.26 0.15 -0.22 -0.84 0.79 0.33 -0.93 -0.6 0.11 0.07 0.09 -0.15 -0.19 0.46 0.5 -0.46 -0.34 -0.08 -0.25 -0.1 -0.34 -0.1 1.77 -0.44 -0.28 -0.67 -0.51 -0.5 -0.08 -0.01 -0.34
0.16 0.14 -0.07 -0.37 0.5 0.71 -0.2 -0.07 -0.18 -0.5 -0.43 -0.41 -0.21 0.34 0.31 0.02 -0.18 -0.19 -0.18 -0.23 -0.34 0.01 1.37 -0.14 -0.14 -0.61 -0.31 -0.23 -0.04 -0.17 -0.22
Bra001499 (CAX2)
 0.11 0.02 0.45 -0.36 0.49 0.5 -0.89 -0.81 -0.43 -0.59 -0.43 -0.43 -0.55 0.79 0.68 -0.16 -0.36 0.61 -0.39 -0.56 -0.52 -0.24 1.79 -0.15 -0.7 -0.13 -0.64 -0.19 -0.05 -0.4 -0.69
Bra002068 (PILS5)
 -1.39 -2.83 -2.86 -3.42 1.31 1.71 -0.78 -1.96 -0.17 -1.31 -0.88 -0.68 -1.43 1.89 1.01 -0.65 -2.36 -2.67 -1.74 -0.79 -0.66 -1.26 2.36 -0.24 -0.42 -0.81 -0.11 -0.04 0.92 -0.48 -1.35
Bra002481 (SIZ1)
 0.04 0.13 0.23 -0.27 0.45 0.47 -0.31 -0.29 -0.14 -0.24 -0.25 -0.31 -0.36 0.37 0.42 -0.17 -0.31 -0.13 -0.24 -0.09 -0.33 -0.14 1.03 -0.36 -0.25 -0.15 -0.21 -0.15 0.2 -0.0 0.15
Bra002917 (TOP1)
 0.03 0.16 0.13 -0.31 0.51 0.33 -0.63 -0.83 -0.18 -0.21 -0.13 -0.18 -0.3 0.4 0.5 -0.14 -0.21 0.0 -0.12 -0.24 -0.42 -0.08 1.37 -0.23 -0.23 -0.36 -0.33 -0.22 0.03 -0.09 0.09
Bra003082 (SPMS)
 0.12 0.34 0.27 -0.02 1.21 1.0 -0.72 -0.68 -0.49 -0.41 -0.53 -0.76 -0.41 0.58 0.7 -0.34 -0.4 -0.3 -0.74 -1.23 -0.93 -0.36 1.32 -0.32 -0.33 -0.59 -0.16 0.03 -0.12 -0.12 0.12
Bra005281 (CASPL4A3)
 -0.14 0.21 0.26 -0.5 0.63 0.57 -0.86 -1.05 -0.12 -0.19 -0.49 -0.66 -0.77 0.28 0.52 -0.0 -0.06 0.77 0.19 -0.77 -0.69 -0.23 1.77 -0.32 -0.5 -0.36 -0.5 -0.39 -0.09 -0.02 -0.67
-0.79 -0.19 0.4 -0.46 0.51 0.39 -0.77 -0.84 -0.54 -0.63 -0.36 -0.49 -0.34 0.58 0.51 -0.18 -0.65 0.73 -0.18 -0.6 -0.4 -0.38 2.0 -0.14 -0.25 -0.05 -0.48 -0.21 -0.03 0.07 -0.97
Bra006645 (VPS24.1)
 0.13 0.2 -0.27 -0.15 0.49 0.46 -0.28 -0.38 -0.03 -0.02 -0.16 -0.05 -0.19 0.15 0.42 0.05 -0.17 0.06 -0.21 -0.23 -0.12 -0.08 0.97 -0.11 -0.04 -0.34 -0.19 -0.04 -0.27 -0.23 -0.34
0.18 -0.06 -0.24 -0.26 0.38 0.46 -0.49 -0.45 -0.2 -0.47 -0.24 -0.35 -0.21 0.44 0.54 -0.0 -0.22 0.08 -0.17 -0.22 -0.25 -0.18 1.09 -0.07 -0.01 -0.26 -0.29 0.04 0.04 -0.16 0.17
-0.19 0.18 0.0 -0.7 1.37 1.54 -0.78 -1.44 -0.28 -1.2 -1.58 -1.02 -1.56 1.18 1.09 -0.23 -0.95 0.06 -0.44 -0.97 -2.21 -0.53 2.24 -0.81 -1.05 -1.35 -1.11 -0.29 -0.26 -0.17 -1.41
Bra007804 (HPGT3)
 0.64 -0.02 0.54 -0.11 1.16 0.9 -0.82 -0.94 -0.3 -0.6 -0.53 -0.63 -0.64 0.25 0.59 -0.38 -0.33 -0.03 -0.23 -0.34 -0.71 -0.21 1.03 -0.15 -0.28 -0.4 -0.31 -0.03 0.15 -0.23 -0.33
Bra008585 (TOL1)
 0.13 0.41 0.35 -0.09 0.52 0.53 -0.58 -0.91 -0.21 -0.38 -0.57 -0.22 -0.32 0.44 0.51 -0.07 -0.42 -0.13 -0.43 -0.51 -0.42 -0.44 1.21 -0.2 -0.14 -0.3 -0.11 0.1 0.13 0.11 -0.13
Bra010347 (AIM1)
 0.05 0.19 -0.08 -0.6 0.95 0.53 -0.88 -1.01 -0.15 -0.26 -0.44 -0.26 -0.61 0.28 0.6 -0.6 -0.62 -0.19 -0.35 -0.77 -0.65 -0.19 1.58 -0.28 -0.25 -0.45 -0.25 0.13 0.33 0.27 0.31
-0.95 0.79 -1.75 -0.76 2.03 1.85 -0.15 -2.9 -0.04 -1.06 -2.35 -0.85 0.06 0.04 0.66 -0.83 -1.8 0.74 -0.81 -1.29 -1.61 -0.31 2.32 -1.51 -1.64 -2.15 -1.85 -0.8 0.08 -1.14 -1.29
-0.74 -0.83 -0.19 -0.14 1.61 1.66 -0.56 -1.36 -0.38 -0.48 -0.45 -0.75 -0.09 0.94 0.71 -0.4 -0.74 0.48 -0.47 -0.51 -0.44 -0.01 1.87 -1.01 -0.79 -1.25 -0.94 -0.6 -0.58 -1.84 -1.75
Bra020821 (RLK6)
 -0.2 -1.48 -1.57 -1.35 1.59 2.43 -2.33 -2.15 -0.58 -1.12 -2.38 -2.13 -2.74 0.23 1.79 -1.13 -0.39 -0.28 -1.7 -3.02 -2.09 -0.68 3.01 -1.11 -1.66 - -1.39 -3.76 -2.09 -0.03 -5.15
-0.33 -0.09 0.65 -0.9 0.41 0.66 -0.66 -0.74 0.31 0.16 -0.13 -0.28 -0.44 0.75 0.79 -0.1 -0.2 0.5 0.16 -0.19 -0.26 0.11 1.58 -0.51 -0.75 -1.0 -0.7 -0.83 -0.69 -0.79 -1.05
Bra024864 (NUDT17)
 -0.46 -0.01 0.27 -0.82 0.45 0.81 0.14 -0.28 0.08 -0.26 -0.05 -0.18 -0.26 -0.71 0.15 -0.12 -0.33 -0.96 -0.05 0.01 -0.14 0.35 1.67 0.1 0.18 -1.34 0.11 -0.72 -0.24 -0.46 -0.44
Bra025366 (AIG2)
 -0.87 -0.38 -0.46 -0.89 0.85 0.84 -1.43 -2.21 -0.16 -0.4 -0.82 -0.83 -1.03 1.17 1.08 -0.43 -0.84 0.46 -0.12 -0.35 -0.88 -0.13 2.14 -0.2 -0.61 -0.93 -0.47 -0.65 0.13 0.2 -0.53
Bra025547 (LHT1)
 -1.9 -0.78 0.07 -2.23 2.18 2.29 -2.7 -2.23 -1.47 -0.67 -3.42 -2.01 -2.63 -0.6 0.75 -0.49 -0.85 -0.26 -1.24 -1.24 -2.03 -0.63 3.18 -2.45 -2.9 -3.54 -2.42 -1.14 -1.52 -0.26 -2.81
Bra026041 (LOS5)
 0.16 0.17 -0.13 -0.34 0.62 0.53 -0.54 -0.38 -0.17 -0.67 -0.38 -0.27 -0.93 0.47 0.67 -0.08 -0.42 0.09 0.13 -0.36 -0.27 -0.21 1.2 -0.17 -0.23 -0.6 -0.42 0.17 0.11 -0.08 0.11
Bra026116 (KMD2)
 -4.06 0.55 0.93 -1.42 1.22 0.98 -3.52 -4.27 -3.07 -0.53 -1.34 -0.87 -0.24 0.54 1.46 -0.33 -0.87 -0.33 -0.5 -0.05 -1.49 -0.27 3.1 -1.38 -1.9 -3.45 -1.63 -3.15 -1.11 -0.61 -3.17
Bra026642 (NUDT17)
 0.44 0.1 0.35 -0.93 0.52 0.3 -0.04 -0.17 0.06 0.41 0.17 -0.04 -0.25 -0.95 -1.17 0.02 -0.31 -1.71 -1.13 0.01 -0.14 0.12 1.77 0.03 -0.28 -1.76 -0.11 -0.14 0.01 0.05 -0.05
Bra026834 (PBL2)
 -0.99 -0.15 0.57 -1.58 0.82 1.28 -2.04 -2.55 -1.16 -1.55 -1.42 -1.51 -1.35 0.99 1.09 -0.9 -0.5 1.62 -0.39 -0.99 -1.17 -0.51 2.75 -1.16 -1.57 -1.68 -2.62 -1.3 -0.74 -0.22 -0.72
Bra027436 (BTL07)
 0.12 -0.14 0.04 -0.17 0.69 0.66 -0.3 -0.39 -0.25 -0.45 -0.38 -0.2 -0.52 0.59 0.49 -0.25 -0.29 -0.07 -0.46 -0.14 -0.41 -0.19 1.19 -0.16 -0.44 -0.55 -0.03 -0.14 0.04 -0.02 0.17
-0.89 -0.15 -0.3 -1.53 0.53 1.08 -1.34 -3.1 -0.35 -0.41 -0.58 -0.7 -1.22 0.59 0.99 -0.23 -0.57 1.34 -0.15 -0.83 -0.59 -0.04 2.5 -0.81 -0.75 -0.51 -0.93 -1.49 -0.24 -0.37 -1.32
Bra028746 (DFB)
 -1.45 -0.99 -1.6 -2.06 1.56 1.73 -0.83 -1.8 0.16 -1.07 -1.17 -0.93 -0.82 1.48 1.06 -0.87 -0.98 0.78 -0.75 -0.63 -0.82 -0.98 2.11 -0.74 -0.99 -1.25 -1.14 0.19 0.3 -1.63 -1.42
Bra029939 (WSD6)
 -1.07 -1.22 -1.09 -1.05 0.69 1.39 -0.06 -0.75 -0.11 -0.19 -0.17 -0.6 -0.67 0.44 0.83 0.15 -0.15 -0.87 -0.46 -0.24 -0.26 -0.09 1.46 0.23 0.07 -0.43 -0.06 0.05 0.23 -0.36 -0.6
-0.23 -0.1 0.11 -0.7 0.75 0.94 -0.73 -1.0 -0.05 -0.48 -0.25 -0.3 -0.72 0.97 1.02 -0.21 -0.31 0.59 0.06 -0.42 -0.45 0.01 1.36 -0.45 -0.62 -0.77 -0.79 -0.17 -0.01 -0.61 -0.91
Bra033467 (CAM9)
 -0.94 -0.18 -0.07 -0.95 0.53 0.94 -0.68 -1.02 -0.11 -0.27 -0.38 -0.34 -0.97 0.88 0.93 -0.03 -0.14 0.51 -0.02 -0.47 -0.34 -0.07 1.79 -0.28 -0.42 -0.39 -0.54 -0.72 -0.33 -0.21 -0.84
Bra034264 (CV)
 -1.15 -1.62 -1.35 -2.45 1.87 2.17 -0.99 -2.4 1.19 -0.14 -1.76 -0.83 -3.86 1.69 1.1 -2.73 -2.26 -0.16 0.01 -0.3 -2.24 -0.0 2.09 -1.85 -1.98 -2.23 -2.67 -0.9 -0.63 -1.66 -1.47
-0.25 0.09 -0.06 -0.79 0.27 0.35 -0.09 -0.35 -0.17 -0.23 -0.15 -0.15 -0.37 0.53 0.51 0.08 -0.23 -0.01 -0.06 -0.09 -0.25 0.02 1.33 -0.18 -0.2 -0.45 -0.19 -0.26 0.09 -0.24 -0.15
Bra035211 (GPX6)
 -0.03 -0.09 0.04 -0.34 0.94 0.71 -0.14 -0.29 0.19 -0.27 -0.11 -0.02 -0.31 0.36 0.48 -0.48 -0.53 -0.36 -0.43 -0.51 -0.48 -0.2 1.75 -0.37 -0.61 -0.93 -0.6 0.08 -0.04 -0.4 -0.66
0.24 0.02 -0.31 -0.23 0.81 0.52 -0.09 -0.32 -0.12 -0.1 -0.31 -0.07 -0.03 0.11 0.3 -0.15 -0.12 -0.45 -0.33 -0.34 -0.18 -0.06 1.2 -0.03 -0.21 -0.38 -0.13 0.03 -0.11 -0.21 -0.51
Bra036321 (AtcathB3)
 -0.08 -0.13 -0.39 -0.62 0.42 0.41 -0.29 -0.72 0.22 -0.14 -0.27 0.06 -0.41 0.54 0.6 -0.52 -0.61 0.24 0.14 -0.45 -0.5 0.04 1.31 -0.27 -0.33 -0.77 -0.34 -0.16 0.12 0.06 0.43
0.14 -0.03 0.1 -0.43 1.09 0.87 -0.9 -1.37 -0.48 -0.7 -0.63 -0.59 -0.78 0.37 0.57 -0.19 -0.49 0.05 -0.1 -0.4 -0.53 -0.72 1.55 0.05 -0.01 -0.5 -0.32 0.21 0.16 -0.15 -0.04
Bra036745 (ISTL1)
 -0.16 -0.14 -0.23 -0.54 0.17 0.27 -0.34 -0.31 0.06 -0.05 -0.19 -0.01 -0.37 0.54 0.68 0.04 -0.18 0.35 0.08 -0.34 -0.19 0.0 1.0 -0.07 -0.09 -0.27 -0.11 -0.01 -0.11 -0.27 -0.47
0.14 0.13 0.02 0.1 0.55 0.41 -0.28 -0.12 0.05 -0.17 -0.15 -0.13 0.06 0.39 0.46 -0.09 -0.19 -0.22 -0.23 -0.19 -0.24 -0.27 0.7 -0.23 -0.22 -0.39 -0.27 -0.01 -0.09 -0.24 -0.12
Bra037981 (FLL3)
 -0.2 -0.45 -0.21 -0.66 0.85 0.7 -0.79 -0.82 0.28 -0.27 -0.26 -0.14 -0.43 0.8 0.36 -0.32 -0.61 0.16 -0.1 -0.42 -0.36 -0.32 0.85 0.18 -0.12 -0.22 -0.02 0.27 0.4 -0.37 -0.1
Bra038785 (CAT1)
 -2.34 -1.28 -0.1 -2.97 2.32 1.81 -2.64 -2.48 -1.72 -2.07 -2.4 -2.31 -1.89 -0.69 1.16 -0.49 -1.33 -1.43 -1.84 -1.68 -2.73 -1.21 2.73 -0.93 -0.96 0.0 -1.05 0.69 0.84 0.08 -2.53
Bra039545 (UGT84A3)
 -2.25 -1.62 -0.27 -1.19 1.99 1.33 0.18 -1.52 -0.34 -1.65 -2.37 -2.03 -1.65 1.79 1.1 -1.93 -2.03 0.9 -1.07 -1.81 -1.78 -1.54 1.73 -0.82 -1.13 -1.73 -0.98 -0.15 1.05 -0.68 0.3
Bra039979 (MTP4)
 -0.17 -1.05 -0.96 -1.34 0.94 1.44 -0.35 -0.86 -0.61 -0.21 -1.07 -0.93 -1.33 0.97 0.37 -0.03 -0.71 -0.41 0.52 0.11 -0.45 -0.31 1.47 0.3 -0.08 -0.5 -0.42 0.43 -0.01 -0.43 -0.51

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.