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Heatmap: Cluster_262 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000639 (ORP1C)
 5.22 6.68 7.61 4.53 6.87 6.9 4.12 3.82 4.28 4.23 3.95 4.91 3.54 6.77 7.11 4.97 4.41 7.18 4.78 4.65 3.95 4.39 16.77 5.0 4.62 6.12 4.93 5.2 6.03 5.05 4.69
Bra000659 (ARGAH1)
 6.73 10.68 12.9 12.29 37.5 29.55 6.67 2.79 2.93 5.42 1.78 3.92 8.27 21.9 7.21 4.97 3.72 13.1 9.23 7.92 5.06 11.6 71.01 2.72 2.27 2.14 2.24 3.09 3.29 2.82 4.3
11.15 14.8 11.5 7.47 23.19 16.79 7.03 8.82 14.42 14.07 14.27 12.07 11.7 18.39 18.97 9.75 10.56 12.62 11.21 12.49 10.57 12.49 45.71 9.84 11.02 8.43 9.42 9.43 12.63 13.33 10.58
7.81 7.71 6.68 5.44 9.94 11.43 6.09 6.69 6.17 4.96 5.2 5.28 6.06 8.89 8.7 7.12 6.19 6.13 6.17 5.98 5.52 7.06 18.11 6.35 6.36 4.59 5.64 5.96 6.8 6.25 6.02
Bra001499 (CAX2)
 5.96 5.61 7.56 4.32 7.78 7.84 3.0 3.16 4.12 3.67 4.1 4.12 3.78 9.56 8.85 4.96 4.31 8.44 4.22 3.77 3.86 4.7 19.15 4.98 3.42 5.07 3.54 4.86 5.33 4.2 3.43
Bra002068 (PILS5)
 1.03 0.38 0.37 0.25 6.68 8.77 1.56 0.69 2.39 1.08 1.46 1.68 1.0 9.97 5.42 1.71 0.52 0.42 0.81 1.55 1.71 1.12 13.76 2.28 2.01 1.53 2.5 2.62 5.08 1.92 1.05
Bra002481 (SIZ1)
 7.77 8.29 8.85 6.29 10.36 10.46 6.11 6.17 6.85 6.41 6.34 6.1 5.89 9.78 10.12 6.74 6.11 6.92 6.39 7.09 6.0 6.86 15.4 5.9 6.37 6.8 6.56 6.82 8.68 7.55 8.37
Bra002917 (TOP1)
 7.64 8.34 8.14 6.01 10.62 9.37 4.82 4.2 6.61 6.46 6.82 6.57 6.04 9.85 10.53 6.78 6.46 7.47 6.88 6.33 5.59 7.06 19.29 6.38 6.36 5.8 5.96 6.43 7.63 7.03 7.94
Bra003082 (SPMS)
 8.16 9.51 9.08 7.42 17.4 15.01 4.55 4.68 5.36 5.65 5.2 4.44 5.66 11.24 12.15 5.91 5.69 6.07 4.51 3.2 3.94 5.84 18.67 6.02 5.97 4.97 6.7 7.64 6.9 6.91 8.14
Bra005281 (CASPL4A3)
 7.18 9.13 9.47 5.58 12.26 11.73 4.35 3.82 7.27 6.95 5.63 5.0 4.63 9.58 11.32 7.89 7.56 13.44 9.03 4.62 4.92 6.76 27.03 6.33 5.57 6.15 5.61 6.03 7.4 7.82 4.96
23.47 35.42 53.3 29.34 57.55 52.98 23.72 22.59 27.81 26.22 31.6 28.79 32.05 60.45 57.75 35.71 25.81 67.09 35.82 26.71 30.71 31.09 161.32 36.58 34.13 39.14 28.9 35.05 39.63 42.49 20.65
Bra006645 (VPS24.1)
 16.29 17.09 12.41 13.45 20.95 20.55 12.3 11.49 14.63 14.72 13.34 14.39 13.08 16.55 19.98 15.5 13.24 15.56 12.88 12.72 13.69 14.09 29.17 13.8 14.55 11.78 13.04 14.53 12.41 12.71 11.83
7.08 6.01 5.27 5.19 8.12 8.6 4.44 4.58 5.42 4.51 5.27 4.91 5.41 8.49 9.1 6.23 5.36 6.6 5.55 5.35 5.23 5.52 13.32 5.96 6.21 5.22 5.1 6.4 6.42 5.59 7.01
6.6 8.51 7.52 4.63 19.44 21.87 4.37 2.78 6.2 3.28 2.52 3.71 2.55 17.03 16.0 6.39 3.89 7.82 5.54 3.84 1.63 5.2 35.46 4.29 3.64 2.95 3.49 6.13 6.26 6.66 2.83
Bra007804 (HPGT3)
 9.43 6.0 8.79 5.62 13.5 11.27 3.43 3.16 4.93 3.99 4.19 3.92 3.88 7.22 9.12 4.66 4.81 5.95 5.16 4.79 3.7 5.25 12.42 5.46 4.99 4.59 4.89 5.95 6.74 5.18 4.84
Bra008585 (TOL1)
 6.79 8.27 7.93 5.83 8.92 8.93 4.14 3.31 5.36 4.76 4.18 5.34 4.98 8.4 8.84 5.92 4.63 5.68 4.59 4.37 4.63 4.58 14.34 5.39 5.62 5.03 5.76 6.63 6.8 6.68 5.65
Bra010347 (AIM1)
 5.5 6.07 5.02 3.49 10.28 7.64 2.89 2.64 4.79 4.43 3.91 4.44 3.47 6.45 8.02 3.51 3.47 4.65 4.15 3.11 3.38 4.65 15.93 4.37 4.47 3.89 4.48 5.82 6.7 6.42 6.6
7.48 25.09 4.32 8.54 58.95 52.15 13.06 1.93 14.06 6.93 2.85 8.03 15.13 14.89 22.81 8.16 4.17 24.09 8.28 5.91 4.73 11.68 72.25 5.08 4.65 3.25 4.02 8.33 15.34 6.59 5.92
6.35 5.97 9.27 9.6 32.35 33.58 7.18 4.12 8.13 7.6 7.74 6.29 10.0 20.39 17.31 8.04 6.34 14.77 7.68 7.47 7.82 10.5 38.74 5.25 6.14 4.46 5.54 7.0 7.1 2.96 3.15
Bra020821 (RLK6)
 0.17 0.07 0.07 0.08 0.59 1.06 0.04 0.04 0.13 0.09 0.04 0.04 0.03 0.23 0.67 0.09 0.15 0.16 0.06 0.02 0.05 0.12 1.58 0.09 0.06 0.0 0.07 0.01 0.05 0.19 0.01
6.91 8.13 13.6 4.64 11.56 13.69 5.5 5.2 10.77 9.69 7.93 7.16 6.41 14.61 14.95 8.08 7.58 12.31 9.7 7.62 7.24 9.39 25.93 6.09 5.17 4.33 5.33 4.89 5.39 5.01 4.19
Bra024864 (NUDT17)
 29.94 40.82 49.66 23.29 56.14 72.0 45.43 33.95 43.41 34.46 39.86 36.23 34.34 25.13 45.61 37.86 32.68 21.1 39.86 41.36 37.29 52.48 131.33 44.23 46.72 16.21 44.28 24.95 34.95 29.97 30.44
Bra025366 (AIG2)
 3.48 4.88 4.62 3.43 11.45 11.36 2.35 1.37 5.69 4.81 3.61 3.57 3.11 14.29 13.46 4.71 3.54 8.75 5.85 4.97 3.46 5.82 28.06 5.54 4.16 3.33 4.59 4.06 6.94 7.3 4.41
Bra025547 (LHT1)
 1.46 3.17 5.69 1.16 24.61 26.61 0.84 1.16 1.96 3.41 0.51 1.35 0.88 3.58 9.11 3.87 3.01 4.52 2.3 2.3 1.33 3.52 49.29 0.99 0.73 0.47 1.02 2.46 1.89 4.54 0.77
Bra026041 (LOS5)
 2.05 2.07 1.69 1.46 2.83 2.66 1.27 1.42 1.63 1.16 1.42 1.52 0.96 2.55 2.92 1.74 1.38 1.96 2.01 1.43 1.53 1.6 4.24 1.63 1.58 1.22 1.37 2.07 1.99 1.74 1.99
Bra026116 (KMD2)
 0.02 0.58 0.75 0.15 0.92 0.78 0.03 0.02 0.05 0.27 0.16 0.22 0.33 0.57 1.09 0.31 0.22 0.31 0.28 0.38 0.14 0.33 3.39 0.15 0.11 0.04 0.13 0.04 0.18 0.26 0.04
Bra026642 (NUDT17)
 13.26 10.5 12.44 5.15 14.08 12.02 9.54 8.67 10.22 13.03 11.02 9.53 8.23 5.08 4.36 9.89 7.9 3.0 4.47 9.83 8.88 10.65 33.31 10.02 8.07 2.88 9.07 8.91 9.83 10.12 9.42
Bra026834 (PBL2)
 0.87 1.56 2.56 0.58 3.06 4.2 0.42 0.3 0.77 0.59 0.65 0.61 0.68 3.43 3.69 0.93 1.22 5.31 1.32 0.87 0.77 1.21 11.61 0.78 0.58 0.54 0.28 0.7 1.03 1.48 1.05
Bra027436 (BTL07)
 6.57 5.49 6.2 5.38 9.76 9.54 4.93 4.62 5.1 4.42 4.64 5.27 4.21 9.09 8.51 5.1 4.94 5.78 4.41 5.49 4.55 5.32 13.76 5.43 4.47 4.14 5.93 5.5 6.22 5.97 6.81
0.79 1.32 1.19 0.51 2.12 3.1 0.58 0.17 1.15 1.1 0.98 0.9 0.63 2.2 2.91 1.25 0.98 3.71 1.31 0.82 0.97 1.42 8.29 0.84 0.87 1.03 0.77 0.52 1.24 1.13 0.58
Bra028746 (DFB)
 0.21 0.29 0.19 0.14 1.73 1.94 0.33 0.17 0.65 0.28 0.26 0.31 0.33 1.63 1.22 0.32 0.3 1.0 0.35 0.38 0.33 0.3 2.53 0.35 0.3 0.25 0.26 0.67 0.72 0.19 0.22
Bra029939 (WSD6)
 6.17 5.53 6.06 6.26 20.8 33.81 12.41 7.67 12.0 11.33 11.45 8.52 8.13 17.48 23.03 14.31 11.61 7.07 9.39 10.92 10.8 12.13 35.6 15.19 13.54 9.61 12.43 13.42 15.18 10.1 8.51
4.49 4.92 5.71 3.25 8.88 10.12 3.18 2.65 5.11 3.79 4.43 4.3 3.22 10.32 10.7 4.57 4.25 7.98 5.52 3.94 3.87 5.33 13.6 3.86 3.43 3.11 3.06 4.7 5.26 3.47 2.82
Bra033467 (CAM9)
 93.36 158.47 170.36 92.59 259.25 344.67 111.8 88.35 165.88 148.4 138.1 141.4 91.46 330.1 340.33 175.99 163.06 255.59 176.77 129.56 141.86 171.04 620.19 147.66 134.23 136.38 122.91 108.49 142.51 154.87 99.99
Bra034264 (CV)
 15.06 10.8 13.07 6.11 121.51 150.24 16.74 6.31 76.06 30.14 9.86 18.77 2.29 107.58 71.51 5.01 6.97 29.76 33.48 27.04 7.05 33.28 142.29 9.25 8.44 7.1 5.22 17.83 21.56 10.56 12.01
23.58 29.78 26.83 16.18 33.69 35.69 26.36 21.97 24.93 23.9 25.18 25.22 21.64 40.48 39.97 29.66 23.86 27.88 26.81 26.35 23.64 28.32 70.38 24.81 24.34 20.46 24.5 23.33 29.76 23.8 25.22
Bra035211 (GPX6)
 71.18 68.22 74.93 57.62 139.22 118.84 66.15 59.62 83.11 60.5 67.32 71.58 58.63 93.29 101.54 51.96 50.42 56.81 53.9 51.17 52.02 63.15 243.99 56.21 47.78 38.06 48.13 76.86 70.97 55.0 46.05
300.38 257.81 204.42 216.54 444.87 363.53 237.91 202.94 234.03 237.38 204.85 241.64 247.79 274.09 311.74 228.34 233.72 185.58 201.46 200.58 223.93 243.5 581.92 248.88 218.95 194.99 231.5 259.55 235.38 219.65 178.39
Bra036321 (AtcathB3)
 101.95 99.1 82.29 70.41 144.64 143.18 88.6 65.75 125.92 98.09 89.68 112.97 81.1 156.85 163.34 75.59 71.03 127.65 119.1 79.35 76.56 111.2 268.88 89.75 85.83 63.32 85.59 96.6 117.56 112.98 145.62
1.99 1.77 1.94 1.34 3.86 3.31 0.97 0.7 1.3 1.11 1.17 1.2 1.05 2.33 2.69 1.58 1.29 1.87 1.69 1.37 1.26 1.1 5.3 1.87 1.79 1.28 1.45 2.09 2.01 1.63 1.76
Bra036745 (ISTL1)
 8.57 8.65 8.15 6.59 10.72 11.52 7.53 7.69 9.94 9.25 8.38 9.46 7.4 13.93 15.25 9.8 8.43 12.19 10.06 7.54 8.36 9.55 19.09 9.07 8.98 7.94 8.82 9.51 8.83 7.9 6.91
13.81 13.68 12.69 13.45 18.33 16.65 10.3 11.49 12.99 11.1 11.26 11.46 13.06 16.39 17.22 11.75 11.0 10.73 10.65 10.94 10.59 10.41 20.28 10.71 10.77 9.55 10.36 12.43 11.77 10.63 11.5
Bra037981 (FLL3)
 6.76 5.71 6.73 4.92 14.08 12.68 4.52 4.4 9.49 6.47 6.52 7.08 5.77 13.54 10.01 6.24 5.1 8.72 7.25 5.83 6.05 6.25 14.0 8.83 7.15 6.69 7.7 9.38 10.26 6.02 7.25
Bra038785 (CAT1)
 0.19 0.39 0.89 0.12 4.77 3.35 0.15 0.17 0.29 0.23 0.18 0.19 0.26 0.59 2.13 0.68 0.38 0.35 0.27 0.3 0.14 0.41 6.34 0.5 0.49 0.96 0.46 1.54 1.7 1.01 0.17
Bra039545 (UGT84A3)
 0.73 1.13 2.9 1.53 13.86 8.77 3.95 1.22 2.75 1.11 0.67 0.85 1.11 12.0 7.48 0.91 0.85 6.52 1.66 1.0 1.01 1.2 11.55 1.97 1.59 1.05 1.76 3.13 7.22 2.17 4.27
Bra039979 (MTP4)
 1.78 0.97 1.03 0.8 3.84 5.47 1.57 1.1 1.32 1.74 0.96 1.05 0.8 3.93 2.6 1.97 1.23 1.51 2.88 2.17 1.47 1.62 5.55 2.47 1.9 1.42 1.5 2.71 2.0 1.49 1.41

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)