Heatmap: Cluster_107 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000558 (MAX1)
-1.43 -2.24 -2.07 -2.12 1.07 1.48 -1.05 -1.01 -0.62 -0.93 -1.21 -1.35 -0.14 2.42 1.79 -0.23 -0.69 0.12 0.4 -0.69 -1.16 -0.64 -0.37 -0.1 -0.59 -0.18 -0.76 -0.29 -0.17 -1.07 -0.41
-1.6 -1.07 -1.54 -1.31 0.83 0.74 -0.6 -0.72 -0.04 -0.4 -0.03 -0.48 -0.39 1.7 1.54 -0.3 -0.02 0.89 0.58 -0.36 -0.19 -0.31 -0.48 -0.45 -0.41 -0.76 -0.15 -0.19 0.09 -0.7 -0.91
Bra002048 (MPT1)
-2.58 -2.17 -2.74 -2.34 0.52 1.09 -0.49 -1.14 -1.23 -0.99 -0.46 -0.47 -2.56 2.15 1.02 -0.62 -1.82 0.08 -0.4 -1.5 -0.83 -0.21 0.17 0.38 0.45 0.48 0.54 0.82 1.08 -1.16 0.03
-0.91 -0.85 -0.93 -0.81 0.94 0.84 -0.45 -0.84 -0.02 -0.13 -0.48 -0.5 -0.45 1.27 1.26 0.39 -0.34 -0.0 0.17 -0.0 0.04 -0.15 -0.23 -0.13 -0.15 0.08 -0.69 -0.22 0.03 -0.47 -0.21
-2.41 -1.56 -2.44 -1.77 1.59 0.4 -0.9 0.7 -0.33 -1.03 -0.24 -0.52 0.2 2.54 1.29 0.38 0.17 -1.02 -0.07 0.29 0.27 0.32 -1.68 -0.78 -1.48 -0.94 -1.0 -0.68 -1.32 -2.44 -2.21
Bra005005 (PROT1)
-0.3 -0.97 -1.12 -0.63 0.66 0.95 -0.04 -0.36 0.25 -0.12 0.02 -0.1 -0.1 1.27 1.04 0.56 0.09 -0.65 -0.14 0.09 0.04 0.06 -0.22 -0.39 -0.46 -1.35 -0.57 -0.15 -0.08 -0.62 -0.47
-1.14 -1.0 -0.44 -0.8 0.26 0.65 -0.1 -0.37 -0.15 -0.1 0.17 -0.39 -0.43 1.29 1.28 0.05 -0.03 -0.28 0.17 0.28 0.1 -0.01 -0.11 0.16 -0.03 -0.46 -0.25 -0.24 0.05 -0.62 -0.87
Bra005762 (AtHMP43)
-1.21 -0.31 0.56 1.85 -0.43 -0.01 -0.78 -1.35 -1.37 -1.54 -1.7 -1.31 -0.66 2.74 2.04 -0.35 -1.68 -0.02 -1.09 -1.34 -2.12 -1.44 1.16 -1.53 -0.91 -0.32 -1.45 -1.25 -1.46 -1.67 -2.6
- -4.46 - - 1.02 1.82 -4.72 -7.17 -2.26 -2.57 -3.72 -2.18 -1.58 3.36 2.84 -1.62 -1.15 1.24 -1.05 -1.91 -4.26 -2.17 1.04 -2.43 -3.23 -3.54 -4.56 -2.44 -3.67 - -7.31
-0.81 -0.48 -0.71 -1.45 0.04 0.69 -0.6 -0.46 0.36 0.29 -0.18 -0.07 0.01 1.3 1.38 0.21 -0.44 0.35 -0.02 0.08 -0.26 0.17 0.27 -0.4 -0.45 -0.79 -0.65 -0.41 0.09 -0.5 -0.48
-3.8 -5.55 -5.61 -7.25 1.09 1.78 -2.92 -3.22 -1.97 -2.94 -2.84 -3.67 -3.16 3.45 2.22 -1.08 -1.58 0.42 -0.29 -2.27 -1.38 -3.23 -1.04 -0.38 -0.9 -1.9 -1.72 0.4 0.18 -3.12 -2.26
Bra009001 (CAF1i)
-0.35 -0.13 -0.17 -0.53 0.58 0.51 -0.36 -0.35 0.1 -0.18 -0.03 -0.27 -0.18 1.08 0.79 -0.0 -0.13 -0.03 0.18 0.16 -0.16 -0.05 -0.09 -0.03 -0.09 -0.57 -0.17 -0.23 -0.01 -0.5 -0.36
Bra009200 (NF-YA10)
-3.94 - -5.41 -7.02 1.74 1.81 -1.68 -2.01 0.03 -0.97 -1.67 -2.41 -2.02 3.0 2.32 -0.09 -0.4 -0.76 0.47 -0.4 -0.67 -1.35 -2.65 -1.53 -1.63 -1.79 -2.75 -0.64 -0.55 -3.44 -3.58
-1.01 -1.11 -0.62 -1.14 0.25 0.67 0.07 -0.38 0.12 -0.1 -0.01 -0.22 -0.44 1.1 1.02 0.17 -0.11 -0.39 0.05 0.44 0.47 0.25 -0.63 0.17 0.24 -0.67 -0.01 -0.1 -0.06 -0.58 -0.67
Bra011408 (ROXY21)
-4.06 -6.65 -6.39 -5.84 1.42 1.66 -1.36 -3.34 -0.01 -1.5 -0.63 -1.71 -1.66 2.27 1.99 -0.01 -1.15 0.22 -0.3 -0.69 -0.3 -1.15 0.58 0.09 -0.29 -2.48 -0.83 0.54 0.84 -1.89 -2.17
Bra011567 (A/N-InvB)
-1.55 -2.77 -2.95 -3.83 0.67 0.61 -2.03 -3.56 -0.56 -1.68 -1.48 -0.69 0.17 3.29 1.85 -0.24 -2.11 0.48 -0.32 -0.55 -1.33 -1.49 0.55 -1.23 -0.74 -1.35 -0.85 -1.33 -0.71 -1.61 -0.17
Bra012725 (KINbeta2)
-0.77 -0.54 -0.55 -0.78 0.55 0.59 -0.38 -0.6 -0.02 0.03 0.07 0.02 0.14 0.81 0.84 0.13 -0.01 -0.06 0.1 -0.01 -0.1 0.04 -0.34 0.11 0.13 -0.64 0.01 -0.21 -0.11 -0.17 -0.04
- - - - 1.76 -2.9 - -1.89 - - -1.83 - 0.22 3.56 1.96 -1.0 -1.75 0.19 0.35 -1.21 -1.23 -2.93 0.2 -1.35 0.34 -0.66 -2.87 0.15 - -2.85 0.09
-1.13 -1.94 -1.41 -0.7 0.94 0.59 -0.34 -0.11 0.45 -0.36 0.15 -0.32 0.55 1.63 1.23 -0.06 -0.02 -0.74 -0.05 -0.64 -0.3 -0.44 -1.69 -0.24 -0.24 -0.14 -0.19 0.23 0.4 -0.74 -0.7
-0.68 -0.74 -0.37 -1.33 0.89 0.82 -1.34 -2.4 0.05 -0.02 0.55 -0.54 -1.31 1.78 1.45 0.37 -0.28 -0.12 0.39 0.56 0.44 -0.44 -0.55 -0.39 -0.83 -1.01 -0.51 -0.21 -0.53 -0.91 -1.21
-0.33 -0.25 -0.65 -0.95 0.77 0.84 -0.17 -0.28 0.12 -0.09 -0.11 -0.13 -0.26 1.15 1.06 0.28 0.01 -0.3 0.06 0.18 0.17 0.09 -0.13 -0.46 -0.44 -1.18 -0.45 -0.28 -0.13 -0.53 -0.7
Bra020568 (NRG1A)
-2.49 -4.05 -2.94 -3.62 0.75 0.8 -0.99 -1.13 -0.22 -0.39 -0.6 -0.46 -0.88 1.83 1.68 -0.01 -0.69 0.68 0.03 -0.42 -0.34 -0.44 0.72 0.32 0.04 -0.57 -0.37 0.02 0.47 -0.48 -0.25
0.44 -4.44 -2.28 -0.89 1.15 1.57 -1.12 -0.68 -0.95 -2.04 -0.19 0.12 0.25 2.39 1.21 0.09 -1.51 0.49 -0.91 0.43 -1.31 0.04 -0.45 -0.52 -0.61 -1.57 -2.14 -1.53 -0.29 -2.38 -0.05
- - - - 1.38 1.91 -5.43 -6.06 -2.6 -2.76 -3.4 -2.15 -1.8 3.32 2.52 -2.58 -0.98 1.42 -0.59 -2.1 -5.28 -1.84 1.16 -2.31 -3.91 -3.52 -5.29 -0.94 -2.33 -3.88 -6.07
- - - - 0.09 0.86 - - -1.47 - -2.59 - -2.28 3.95 2.64 -2.38 -0.83 0.85 -0.15 -0.86 - - -0.9 -1.58 - - - -0.89 -1.59 - -
Bra022654 (EAL)
-1.43 -1.49 -2.7 -2.23 0.97 0.82 -0.44 -1.08 0.16 0.19 -0.5 -0.66 -0.32 1.65 1.66 0.31 0.4 -0.38 0.17 -0.04 0.02 -0.17 -0.9 -0.13 -0.17 -0.54 -0.32 -0.4 -0.15 -0.72 -0.2
Bra023030 (PAM18-1)
-0.49 -0.38 -0.24 -0.56 0.56 0.56 -0.47 -0.72 0.09 -0.1 -0.12 -0.08 -0.03 0.88 0.89 0.09 0.04 0.09 0.13 0.18 0.02 0.17 -0.33 0.13 -0.19 -0.69 -0.01 -0.46 -0.13 -0.38 -0.17
Bra025018 (SSP4)
-0.64 -0.62 -0.78 -1.11 0.28 0.92 -0.41 -0.8 0.08 -0.16 0.02 -0.11 -0.68 1.67 1.42 0.05 -0.08 0.04 0.12 -0.06 -0.28 0.01 0.38 -0.5 -0.62 -0.58 -0.64 -0.52 -0.13 -0.54 -0.51
Bra025910 (BEE1)
-1.42 -1.01 -2.55 -2.82 0.58 1.32 -0.42 -1.59 -0.51 -1.48 -1.06 -1.19 -0.58 1.92 1.65 0.01 -0.34 0.74 0.38 -0.13 -0.21 -0.81 0.35 -0.0 -0.15 -0.96 -0.81 0.74 0.22 -0.98 -1.12
- - - -0.55 0.85 1.35 -1.88 -0.98 -0.7 -1.36 -1.91 -1.6 -0.07 3.14 2.27 0.89 0.69 1.19 -0.79 -2.1 0.67 -0.45 - - - - - -3.08 - - -
Bra026749 (NRB4)
-0.34 -0.45 -0.24 -0.27 0.44 0.55 -0.09 -0.27 0.18 -0.08 0.17 0.02 -0.18 0.58 0.72 0.21 -0.04 -0.18 -0.26 0.03 0.01 0.03 -0.12 -0.23 -0.1 -0.11 -0.21 -0.12 0.04 -0.39 -0.22
Bra028369 (MYB305)
-2.87 0.13 - - 1.89 1.63 -3.41 -0.96 -1.02 -0.45 -3.45 - -1.52 3.24 2.92 -1.01 -0.49 -0.3 -2.42 - -3.22 -0.95 - -0.72 - - -3.28 -3.03 - - -
-0.22 -0.14 -0.34 -0.3 0.28 0.17 -0.59 -0.44 -0.14 -0.07 0.17 -0.37 0.19 1.14 0.81 -0.28 -0.08 0.19 -0.03 0.01 -0.08 0.05 -0.08 -0.02 -0.2 0.11 -0.21 -0.22 -0.17 -0.19 -0.35
Bra031056 (BTSL2)
-1.53 -0.48 -0.66 -1.83 0.22 0.83 -1.23 -1.34 0.15 -0.62 -0.8 -0.32 -0.37 2.13 1.39 -0.65 -0.36 -0.07 -0.18 -0.03 -0.26 -0.1 -0.04 -0.16 -0.45 -0.4 0.07 -0.43 0.24 -0.26 0.25
Bra031473 (GEM1)
-0.57 -0.59 0.02 -0.79 0.75 0.43 -0.91 -0.56 0.13 -0.13 0.09 -0.0 -0.3 0.92 0.86 0.06 -0.01 0.16 0.25 0.26 0.03 -0.01 -0.74 0.04 -0.2 -0.41 -0.29 -0.2 0.09 -0.18 -0.3
-1.24 -2.02 -2.67 -3.96 0.83 0.68 -1.22 -2.92 -1.21 -0.79 -0.53 -0.93 -1.38 2.89 1.57 -0.8 -0.45 0.37 -0.1 -0.36 -1.12 -0.77 1.06 -0.25 -0.82 -1.32 -1.86 0.22 -0.21 0.01 -0.77
-0.06 -0.28 0.1 -0.34 1.06 0.67 -0.86 -1.17 0.14 -0.23 0.13 -0.25 -0.45 1.17 0.93 0.05 -0.2 0.3 -0.05 0.03 -0.21 -0.21 -0.57 -0.33 -0.3 -0.79 -0.38 -0.27 0.02 -0.36 -0.29
Bra031663 (GolS3)
-4.2 -5.19 -5.37 -5.78 0.36 0.14 -2.2 -1.92 -0.76 -2.27 -1.96 -1.8 -1.4 3.53 1.67 -1.47 -2.41 1.69 -0.47 -1.62 -1.4 -1.68 1.72 -1.53 -2.01 -2.94 -2.59 -0.45 -0.42 -2.44 -2.45
Bra032147 (SAW1)
-0.32 -0.78 -0.39 -0.33 0.68 0.77 -0.19 -0.13 0.09 -0.11 -0.24 -0.25 -0.46 1.45 1.31 0.22 0.16 -0.22 -0.1 0.06 0.02 -0.14 -1.34 -0.46 -0.52 -0.46 -0.54 -0.09 0.03 -0.91 -0.8
Bra032315 (COR413IM2)
-0.51 -0.89 -0.83 -1.27 0.32 1.04 -0.32 -0.78 0.65 0.08 -0.13 -0.56 -0.54 1.89 1.54 -0.34 -0.0 -0.87 0.24 -0.51 -0.35 -0.35 -2.08 -0.24 -0.41 -0.75 -0.48 -0.06 0.2 -0.47 -0.32
Bra034628 (ELK4)
-1.02 -1.18 -0.53 -0.79 0.67 0.84 -0.4 -0.54 0.28 -0.16 -0.25 -0.16 -0.4 1.68 1.41 0.25 0.06 -0.44 0.18 0.28 -0.08 -0.32 -0.56 -0.32 -0.44 -0.49 -0.62 -0.07 -0.1 -1.0 -1.02
- - - - 1.68 1.44 -6.51 - -2.82 - -6.3 - -6.13 3.89 2.7 -3.31 -5.27 0.58 -0.81 -6.31 -6.31 -3.61 -0.66 -2.93 -4.55 - -6.19 -2.53 -2.39 -6.26 -3.2
-0.34 -0.3 0.01 -0.41 0.25 0.4 -0.4 -0.21 0.14 -0.14 0.11 -0.07 -0.34 0.91 0.68 0.18 0.11 -0.22 -0.05 0.11 -0.13 0.1 -0.2 -0.23 0.04 -0.14 -0.04 -0.16 -0.07 -0.35 -0.27
Bra036650 (AEP2)
-3.25 -1.53 -1.9 -2.06 0.26 -0.09 -1.34 -2.59 -0.78 -0.76 -1.0 -0.93 -0.74 2.56 1.22 -0.63 -0.51 1.71 -1.8 -0.67 -1.68 -0.68 2.26 -0.55 -0.3 -0.71 -1.53 -0.58 -0.24 -0.74 -0.96
Bra037028 (ROXY21)
-8.11 -4.75 -4.44 -5.79 1.27 1.51 -2.07 -3.58 -1.07 -1.65 -1.16 -1.71 -0.81 3.02 2.15 -0.84 -1.37 0.04 -0.2 -0.91 -1.04 -2.03 -0.36 -0.33 -0.43 -1.13 -1.23 0.15 0.56 -1.71 -1.18
Bra037037 (GATA9)
-2.52 - -2.26 -1.91 0.88 0.23 -2.11 -1.49 -0.63 -2.9 -0.96 -1.54 0.06 2.85 2.03 -0.88 -2.22 0.4 -0.88 -2.57 -1.21 -2.09 1.64 -1.23 0.03 -1.41 -1.65 -0.84 0.91 -0.89 0.12
Bra037352 (ADF8)
-0.23 -1.15 -1.59 -1.61 1.23 0.83 -0.45 -0.78 -0.42 -0.28 0.17 -0.01 -0.64 1.91 1.04 -0.33 0.23 -0.58 -0.25 0.14 0.6 -0.2 -3.32 -0.09 -0.72 -0.76 -0.87 0.2 -0.47 0.36 -0.87
-0.66 -3.91 -1.42 -2.18 0.34 1.08 -1.74 -0.86 0.31 -1.3 -0.57 -0.65 -0.44 1.92 1.74 -0.84 -0.08 0.88 0.43 -0.4 -0.29 0.47 1.07 -1.89 -0.58 -1.04 -1.45 -0.14 0.02 -0.85 -0.63
-1.09 -1.34 -0.94 -2.14 0.27 0.85 -1.1 -0.38 0.23 -0.09 -0.06 -0.5 -0.66 1.66 1.44 -0.67 -0.4 -0.07 0.41 -0.28 -0.3 -0.38 0.66 -0.23 -0.13 -0.75 -0.22 -0.21 0.29 -0.16 -0.02
Bra039212 (BLH4)
-0.48 -0.78 -0.44 -0.86 0.73 0.83 -0.16 -0.1 -0.0 -0.09 -0.26 -0.22 -0.71 1.15 1.11 0.03 0.36 -0.04 0.04 0.11 -0.2 -0.04 -1.18 -0.09 -0.22 -0.39 -0.2 0.05 0.11 -0.58 -0.61
-0.37 -0.44 0.03 -0.7 0.63 0.91 -0.68 -1.38 0.35 -0.14 0.15 -0.16 -0.45 1.28 1.16 -0.18 -0.37 0.08 -0.01 -0.19 -0.42 -0.0 -0.15 -0.21 -0.42 -0.81 -0.58 -0.13 0.24 -0.37 -0.19
Bra040529 (UNE8)
-3.67 -4.86 -4.59 -5.22 0.57 1.01 -1.19 -2.34 0.46 -0.27 0.03 -1.0 -1.2 2.28 1.74 0.29 0.06 0.04 0.53 0.29 0.17 -0.66 -0.96 -0.35 -0.5 -0.81 -0.72 -0.02 0.43 -1.07 -0.7
- - -1.84 - 0.94 1.19 -4.49 - -0.83 -1.3 0.34 0.31 0.34 3.17 2.15 -0.16 -1.53 -3.99 0.18 -1.19 0.96 -0.79 -1.2 -1.05 -1.39 - -2.68 -1.99 -1.47 -1.78 -0.83
Bra040594 (DJ1D)
0.02 -0.23 -0.44 -0.4 0.04 0.46 -0.09 -0.15 0.03 -0.14 -0.18 -0.3 -0.22 0.88 0.97 0.15 0.03 -0.26 0.11 -0.23 -0.08 -0.17 -0.78 0.02 -0.08 -0.01 -0.05 -0.11 0.12 -0.32 0.11

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.